A novel space aided homology modeling approach.
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README.md
cpanm
install.sh
space_molding.pl

README.md

NAME

space_molding

DESCRIPTION

A novel space aided homology modeling approach.

SYNOPSIS (running command)

space_molding.pl file

DEPENDENCIES

-Perl, >= 5.10

-Bio::PDB::Structure, >= 0.01 (Perl module)

-File::Spec, >= 3.33 (Perl module)

-List::Util, >= 1.25 (Perl module)

-Math::Round, >= 0.06 (Perl module)

EXAMPLES

-Visualisation (with superposition and slab)

-Output PDB file example (logo)

1YI5_model.pdb - model of the a-cobratoxin-AChBP complex

SUPPORTED OPERATING SYSTEMS

space_molding runs out of the box -via install.sh- on GNU/Linux and OSX systems (reasonably up to date ones, that is).

It should run out of the box -via install.sh- on BSD systems, as well.

It can run on Windows systems, as long as you manually install Perl and the other dependencies listed above. The install.sh script won't work on default Windows systems.

AUTHORS

-Dimitrios - Georgios Kontopoulos <dgkontopoulos@gmail.com>

-Dimitrios Vlachakis <dvlachakis@bioacademy.gr>

-Sophia Kossida <skossida@bioacademy.gr>

LICENSE

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

For more information, see http://www.gnu.org/licenses/.