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1 parent 7e3a878 commit cbf7fcb8718118c6e993dbeb6d40600d3cb026b4 @ctb ctb committed Oct 30, 2012
Showing with 108 additions and 100 deletions.
  1. +5 −8 .gitignore
  2. +10 −0 Makefile
  3. 0 {recent-version → }/artifacts-bib.bib
  4. +93 −82 recent-version/artifacts-paper2.tex → assembly-artifacts.tex
  5. 0 {recent-version → }/bicaption.sty
  6. 0 {recent-version → }/caption.sty
  7. 0 {recent-version → }/caption2.sty
  8. 0 {recent-version → }/caption3.sty
  9. BIN {recent-version/Figures → figures}/.DS_Store
  10. BIN {recent-version/Figures → figures}/._figure1-density.pdf
  11. BIN {recent-version/Figures → figures}/._figure2-hckmers.pdf
  12. BIN {recent-version/Figures → figures}/._figure3-contigs.pdf
  13. BIN {recent-version/Figures → figures}/._figure4-contigs.pdf
  14. BIN {recent-version/Figures → figures}/._figure5-5mers.pdf
  15. BIN {recent-version/Figures → figures}/._stoptag-table.pdf
  16. BIN {recent-version/Figures → figures}/._table1.pdf
  17. BIN {recent-version/Figures → figures}/._table2-assemblies.pdf
  18. BIN {recent-version/Figures → figures}/._table3-simulated-stoptags.pdf
  19. BIN {recent-version/Figures → figures}/._table4-overlap.pdf
  20. BIN {recent-version/Figures → figures}/assembly_comparison.pdf
  21. BIN {recent-version/Figures → figures}/contig_pos_stoptags.pdf
  22. BIN {recent-version/Figures → figures}/density_pos.pdf
  23. BIN {recent-version/Figures → figures}/figure1-density.pdf
  24. BIN {recent-version/Figures → figures}/figure2-hckmers.pdf
  25. BIN {recent-version/Figures → figures}/figure3-contigs.pdf
  26. BIN {recent-version/Figures → figures}/figure4-contigs.pdf
  27. BIN {recent-version/Figures → figures}/figure5-5mers.pdf
  28. BIN {recent-version/Figures → figures}/lump_data.pdf
  29. BIN {recent-version/Figures → figures}/overlap_stoptag_ids.pdf
  30. BIN {recent-version/Figures → figures}/position_read_stoptags.pdf
  31. BIN {recent-version/Figures → figures}/position_read_stoptags_rumen_human_gut.pdf
  32. BIN {recent-version/Figures → figures}/position_read_stoptags_sim.pdf
  33. BIN {recent-version/Figures → figures}/position_read_stoptags_soils.pdf
  34. BIN {recent-version/Figures → figures}/simulated_stoptag_ids.pdf
  35. BIN {recent-version/Figures → figures}/stoptag-table.pdf
  36. BIN {recent-version/Figures → figures}/table1.pdf
  37. BIN {recent-version/Figures → figures}/table2-assemblies.pdf
  38. BIN {recent-version/Figures → figures}/table3-simulated-stoptags.pdf
  39. BIN {recent-version/Figures → figures}/table4-overlap.pdf
  40. 0 {recent-version → }/ltcaption.sty
  41. BIN {recent-version → }/lump_comparison_assembly.xlsx
  42. 0 {recent-version → }/newfloat.sty
  43. 0 {recent-version → }/plos2009.bst
  44. +0 −10 recent-version/Makefile
  45. 0 {recent-version → }/setspace.sty
  46. 0 {recent-version → }/simplemargins.sty
  47. 0 {recent-version → }/subcaption.sty
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@@ -1,9 +1,6 @@
*~
-.gitignore
-assembly_artifacts.aux
-assembly_artifacts.log
-assembly_artifacts.pdf
-artifacts-paper2.aux
-artifacts-paper2.blg
-artifacts-paper2.log
-artifacts-paper2.pdf
+assembly-artifacts.aux
+assembly-artifacts.blg
+assembly-artifacts.log
+assembly-artifacts.pdf
+assembly-artifacts.bbl
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@@ -0,0 +1,10 @@
+all: assembly-artifacts.pdf
+
+clean:
+ rm -fr *.log *.aux assembly-artifacts.pdf
+
+assembly-artifacts.pdf: assembly-artifacts.tex
+ pdflatex assembly-artifacts
+ bibtex assembly-artifacts
+ pdflatex assembly-artifacts
+# pdflatex artifacts_paper
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@@ -1,10 +0,0 @@
-all: artifacts-paper2.pdf
-
-clean:
- rm -fr *.log *.aux artifacts-paper2.pdf
-
-artifacts-paper2.pdf: artifacts-paper2.tex
- pdflatex artifacts-paper2
- bibtex artifacts-paper2
- pdflatex artifacts-paper2
-# pdflatex artifacts_paper
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