Skip to content
Permalink
Branch: master
Find file Copy path
Find file Copy path
Fetching contributors…
Cannot retrieve contributors at this time
19 lines (15 sloc) 447 Bytes
# GTDB-Tk database dir, path relative to sourmash-oddify top-level directory.
# The specified directory should have 'fastani/' and 'taxonomy/' subdirs.
gtdbtk_data: ../gtdbtk/release89
# input genomes & their extension
genomes_dir: genomes.test
genomes_extension: .fna.gz
# outputs.
outputs_dir: outputs.test
# identifier prefixes. Must be non-empty.
filter_prefixes:
- TOBG
# 'sourmash lca index' parameters.
scaled: 10000
build_ksizes:
- 51
You can’t perform that action at this time.