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Playing with MQF #772

merged 6 commits into from Nov 8, 2019


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luizirber commented Nov 7, 2019

This PR implements a new SBT using MQFs as internal nodes, based on the rust_ffi branch at the MQF repo.

(it was also driving what features to expose initially on the MQF wrapper).

Since there is no index building implemented in Rust yet, is building the internal nodes explicitly (and will serve as reference for when index building is actually implemented).


  • Is it mergeable?
  • make test Did it pass the tests?
  • make coverage Is the new code covered?
  • Did it change the command-line interface? Only additions are allowed
    without a major version increment. Changing file formats also requires a
    major version number increment.
  • Was a spellchecker run on the source code and documentation after
    changes were made?
@luizirber luizirber added the rust label Nov 7, 2019

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codecov bot commented Nov 7, 2019

Codecov Report

Merging #772 into master will not change coverage.
The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #772   +/-   ##
  Coverage   89.48%   89.48%           
  Files          29       29           
  Lines        4554     4554           
  Branches       46       46           
  Hits         4075     4075           
  Misses        476      476           
  Partials        3        3

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@luizirber luizirber referenced this pull request Nov 7, 2019
3 of 5 tasks complete
@luizirber luizirber changed the title [WIP] Playing with MQF Playing with MQF Nov 8, 2019
@luizirber luizirber merged commit 542c6c8 into master Nov 8, 2019
8 checks passed
8 checks passed
LGTM analysis: Python No code changes detected
LGTM analysis: C/C++ No new or fixed alerts
LGTM analysis: JavaScript No new or fixed alerts
Travis CI - Pull Request Build Passed
codecov/patch Coverage not affected when comparing 3d5adef...b7eea2a
codecov/project 89.48% remains the same compared to 3d5adef
netlify/sourmash-docs/deploy-preview Deploy preview ready!
@luizirber luizirber deleted the rust/mqf_sketch branch Nov 8, 2019

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ctb commented Nov 9, 2019

...are we bypassing reviews now, or is this a "doesn't actually affect sourmash functionality ATM" merge? :)

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luizirber commented Nov 9, 2019 — with Octobox

I've been merging rust-only branches, do you want to review them?
(Anything touching Python/Cython/C++ goes thru review, of course)


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luizirber commented Nov 9, 2019

I've also trying to bring down my branches/PR count, too much work on keeping everything in sync...

@luizirber luizirber referenced this pull request Nov 13, 2019
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