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Fixes #62

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tjakobi committed Sep 9, 2018
1 parent ca61453 commit 3a6e497a7dcbc63d160608d19afb48a6cfec8ba3
Showing with 4 additions and 4 deletions.
  1. +1 −1 README.rst
  2. +3 −3 docs/Installation.rst
@@ -48,7 +48,7 @@ The installation requires running python on the command line:

::

git clone git@github.com:dieterich-lab/circtools.git
git clone https://github.com/dieterich-lab/circtools.git
cd circtools
python3 setup.py install --verbose --user

@@ -2,7 +2,7 @@ Installation
********************************************************


**circtools** is written in Python3 (>=3.4). The tool has a number of external dependencies, mostly standard bioinformatics tools and packages. The installation will, by default, try to install all required dependencies.
**circtools** is written in Python2 (>= 2.7, ``detect`` and ``reconstruct`` module) and Python3 (>=3.4, all other modules). The tool has a number of external dependencies, mostly standard bioinformatics tools and packages. The installation will, by default, try to install all required dependencies.

Installation is performed via `python3 setup.py install`. No sudo access is required if the installation is suffixed with ``--user`` which will install the package in a user-writeable folder. In this case, the binaries should be installed to ``/home/$USER/.local/bin/`` (for Debian-based systems).

@@ -16,7 +16,7 @@ The default installation requires running python on the command line and will in

.. code-block:: bash
git clone git@github.com:dieterich-lab/circtools.git
git clone https://github.com/dieterich-lab/circtools.git
cd circtools
python3 setup.py install --verbose --user
@@ -73,7 +73,7 @@ Getting the source code

.. code-block:: bash
git clone git@github.com:dieterich-lab/circtools.git
git clone https://github.com/dieterich-lab/circtools.git
Installation
^^^^^^^^^^^^

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