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Fix broken pysam dependency of HTseq for DCC #58

tjakobi opened this Issue Sep 9, 2018 · 1 comment


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tjakobi commented Sep 9, 2018

DCC requires HTseq that does not install with the most recent pysam version. We have to manually specify the pysam version to be 0.13.0.

@tjakobi tjakobi self-assigned this Sep 9, 2018

@tjakobi tjakobi added bug detect labels Sep 9, 2018


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tjakobi commented Sep 9, 2018

Fixed in commit dieterich-lab/DCC@68c2133.

Additionally, the latest release of HTseq, released two days ago (0.11.0) also fixes this issues and installs fine with pysam >= 0.13.

@tjakobi tjakobi closed this Sep 9, 2018

tjakobi added a commit that referenced this issue Sep 9, 2018

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