From 091367bf9f74ee385781f2e01abd8915570d39de Mon Sep 17 00:00:00 2001
From: jlee733 <75899901+jlee733@users.noreply.github.com>
Date: Fri, 20 Mar 2026 15:11:06 -0400
Subject: [PATCH] Revert "Added Dockerfile and accessing mdx2 through Docker
 container"

---
 .dockerignore                | 24 --------------------
 .github/Dockerfile           | 34 ----------------------------
 .github/workflows/docker.yml | 43 ------------------------------------
 README.md                    | 23 +------------------
 4 files changed, 1 insertion(+), 123 deletions(-)
 delete mode 100644 .dockerignore
 delete mode 100644 .github/Dockerfile
 delete mode 100644 .github/workflows/docker.yml

diff --git a/.dockerignore b/.dockerignore
deleted file mode 100644
index 2163ae4..0000000
--- a/.dockerignore
+++ /dev/null
@@ -1,24 +0,0 @@
-.git
-.github
-.gitignore
-.dockerignore
-.DS_Store
-
-__pycache__
-*.py[cod]
-*.egg-info/
-*.egg
-build/
-dist/
-.eggs/
-
-.env
-.venv
-env/
-venv/
-
-.mypy_cache/
-.pytest_cache/
-.coverage
-htmlcov/
-.ipynb_checkpoints
diff --git a/.github/Dockerfile b/.github/Dockerfile
deleted file mode 100644
index 6afa919..0000000
--- a/.github/Dockerfile
+++ /dev/null
@@ -1,34 +0,0 @@
-# diffuseproject/mdx2:1.0.0 (https://hub.docker.com/repository/docker/diffuseproject/mdx2/tags/1.0.0/sha256-abfcf7d2feacdf9a207a13c2bb908d62e6f461259f78e82d3bb8983267446291)
-
-FROM mambaorg/micromamba:1.5.5 AS micromamba_stage
-
-FROM python:3.10-slim AS final
-
-RUN apt-get update && apt-get install -y ca-certificates git
-
-COPY --from=micromamba_stage /bin/micromamba /usr/local/bin/micromamba
-
-ENV PATH="/usr/local/bin:/opt/conda/bin:$PATH"
-ENV JUPYTER_PORT=8888
-
-RUN mkdir -p /opt/conda
-
-WORKDIR /home/dev
-
-COPY env.yaml .
-
-# Use micromamba to create the environment and install packages
-RUN /usr/local/bin/micromamba create -f env.yaml -n mdx2-dev && \
-    /usr/local/bin/micromamba install -y -n mdx2-dev nexpy jupyterlab jupyterlab-h5web dials xia2 wget tar -c conda-forge && \
-    /usr/local/bin/micromamba clean --all --yes
-
-COPY . .
-
-# Install dials-extensions pinned to a specific commit (963fe9e458a505a8443c988d45fb8dcb4532768f) for CHESS beamline compatibility
-# Install the local package in editable mode within the environment
-RUN /usr/local/bin/micromamba run -n mdx2-dev pip install git+https://github.com/FlexXBeamline/dials-extensions.git@963fe9e458a505a8443c988d45fb8dcb4532768f
-RUN /usr/local/bin/micromamba run -n mdx2-dev pip install -e .
-
-EXPOSE 8880-8890
-
-CMD /usr/local/bin/micromamba run -n mdx2-dev jupyter lab --ip=0.0.0.0 --port=$JUPYTER_PORT --no-browser --allow-root
diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
deleted file mode 100644
index 9d9bcd8..0000000
--- a/.github/workflows/docker.yml
+++ /dev/null
@@ -1,43 +0,0 @@
-name: docker
-
-on:
-  push:
-    branches:
-      - main
-  pull_request:
-
-jobs:
-  docker:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-
-      - name: Login to Docker Hub
-        uses: docker/login-action@v3
-        with:
-          username: ${{ vars.DOCKERHUB_USERNAME }}
-          password: ${{ secrets.DOCKERHUB_TOKEN }}
-
-      - name: Set up QEMU
-        uses: docker/setup-qemu-action@v3
-
-      - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@v3
-
-      - name: Determine Docker tags
-        id: tags
-        run: |
-          if [ "${{ github.ref }}" = "refs/heads/main" ]; then
-            echo "tags=${{ vars.DOCKERHUB_USERNAME }}/mdx2:latest" >> $GITHUB_OUTPUT
-          else
-            echo "tags=${{ vars.DOCKERHUB_USERNAME }}/mdx2:test" >> $GITHUB_OUTPUT
-          fi
-
-      - name: Build and push
-        uses: docker/build-push-action@v6
-        with:
-          context: .
-          file: .github/Dockerfile
-          push: ${{ github.ref == 'refs/heads/main' }}
-          tags: ${{ steps.tags.outputs.tags }}
diff --git a/README.md b/README.md
index c14c7ba..1bccbae 100644
--- a/README.md
+++ b/README.md
@@ -44,7 +44,7 @@ Publications describing [ando-lab/mdx2](https://github.com/ando-lab/mdx2):
 
 ### Prerequisites
 
-For a conda-based installation, you'll need [micromamba](https://mamba.readthedocs.io/en/latest/installation/micromamba-installation.html) or equivalent. The Docker-based installation requires you to install and login to [Docker](https://www.docker.com/get-started/).
+For a conda-based installation, you'll need [micromamba](https://mamba.readthedocs.io/en/latest/installation/micromamba-installation.html) or equivalent.
 
 ### User install (conda environment)
 
@@ -71,24 +71,3 @@ pip install -e ".[dev]"
 ```
 
 The last line installs mdx2 in editable mode, with optional development tools including pytest and ruff
-
-### Developer Install (Docker container)
-
-Pull image from Docker Hub and run the container. Search the Docker container logs for the localhost address to access mdx2 within a Jupyter Lab notebook or terminal.
-
-- Docker image exposes ports 8880-8890 (default: 8888)
-- Platform: linux/amd64
-```bash
-git clone https://github.com/diff-use/mdx2.git
-cd mdx2
-docker pull diffuseproject/mdx2:1.0.0
-docker run --platform linux/amd64 --name mdx2_container -it -d -e JUPYTER_PORT={CONTAINER_PORT} -p {HOST_PORT}:{CONTAINER_PORT} -v "$(pwd)":/home/dev diffuseproject/mdx2:1.0.0
-docker logs mdx2_container
-```
-
-(Optional) Open a shell in the running container:
-```bash
-docker exec -it mdx2_container /bin/bash
-eval "$(micromamba shell hook --shell bash)"
-micromamba activate 'mdx2-dev'
-```
\ No newline at end of file