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HotPho, a bioinformatics tool to discover spatially interacting phosphorylation sites and mutations in cancer

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HotPho: Spatially Interacting Phosphorylation Sites and Mutations in Cancer

Analysis for co-clustering mutations and phosphosites##

The project analyzes HotPho outputs and investigates co-clustering somatic mutations and phosphosites. This directory contain the analyses scripts.
HotSpot3D/Data_201807/worklog documents the latest-used commands to run HotPho on PTMcosmos phosphosites and TCGA MC3 mutations. Analyses contains multiple scripts used to analyze HotPho results.

HotPho/HotSpot3D

For the HotPho/HotSpot3D codebase, please refer to https://github.com/ding-lab/hotspot3d

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HotPho, a bioinformatics tool to discover spatially interacting phosphorylation sites and mutations in cancer

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