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FIX: Do not reset link counts upon rebake #6733
This was an indentation mistake introduced in 44eba0b. Pretty understandable, considering we are indented 8 levels deep in this method. The first commit corrects the issue and adds a test, the second commit refactors the method to reduce complexity.
(Please use rebase & merge, not squash, so that we keep the two commits separate)
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