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.ipynb_checkpoints Adding new photo, recent news, and arXiv pre-print. Jun 11, 2018
_data Adding CV link. Sep 20, 2018
_drafts clone from staeiou.github.io Sep 15, 2016
_includes Support MathJax for rendering equations. Feb 26, 2018
_layouts fix teaching "Published in" bug Jul 21, 2017
_pages Adding poster link to annoucements on About page. Sep 21, 2018
_portfolio Update portfolio-2.html Sep 21, 2016
_posts add generic examples Sep 18, 2016
_publications Adding reading list and making tweaks elsewhere. Jul 19, 2018
_sass image back to 175% Jul 19, 2017
_talks modify examples to reflect output of new markdown_generator scripts Mar 28, 2017
_teaching Update 2015-spring-teaching-2.md Jan 13, 2017
assets Add Academicons Jul 17, 2017
cv Updating CV with BindsNET @ PyTorch poster. Sep 21, 2018
files Adding poster link to annoucements on About page. Sep 21, 2018
images Fix? Jun 20, 2018
markdown_generator Namely, adding notes.md for page containing pointers to notes on book… Sep 7, 2018
notes Updating CV; updating papers + books reading list; compiling Schwartz… Sep 15, 2018
read Adding papers and two synopses. Sep 24, 2018
talkmap add talkmap files Sep 19, 2016
.gitignore Ignore the _site/ directory for local builds. Mar 25, 2017
CHANGELOG.md clone from staeiou.github.io Sep 15, 2016
CONTRIBUTING.md add info about tagging code changes Jul 21, 2017
Gemfile implement liveserve Feb 18, 2018
Gemfile.lock Changing some configuration options. Apr 11, 2018
LICENSE Merge branch 'master' of https://github.com/djsaunde/djsaunde.github.io May 2, 2018
README.md Merge branch 'master' of https://github.com/djsaunde/djsaunde.github.io May 2, 2018
_config.dev.yml clone from staeiou.github.io Sep 15, 2016
_config.yml Fixing bug. Jun 20, 2018
headshot.jpg Fixing bug. Jun 20, 2018
me.jpg updating and reformatting quite a bit. Feb 2, 2017
me_and_quinn.jpg New picture. Nov 29, 2017
package.json clone from staeiou.github.io Sep 15, 2016
status.html migrating content from student website to GitHub-hosted site Jun 22, 2016
talkmap.ipynb move talkmap.ipynb out of _talks Sep 20, 2016
talkmap.py .py version of talkmap.ipynb Jan 13, 2017
umass-seal.gif migrating content from student website to GitHub-hosted site Jun 22, 2016

README.md

A Github Pages template for academic websites. This was forked (then detached) by Stuart Geiger from the Minimal Mistakes Jekyll Theme, which is © 2016 Michael Rose and released under the MIT License. See LICENSE.md.

I think I've got things running smoothly and fixed some major bugs, but feel free to file issues or make pull requests if you want to improve the generic template / theme.

Instructions

  1. Register a GitHub account if you don't have one and confirm your e-mail (required!)
  2. Fork this repository by clicking the "fork" button in the top right.
  3. Go to the repository's settings (rightmost item in the tabs that start with "Code", should be below "Unwatch"). Rename the repository "[your GitHub username].github.io", which will also be your website's URL.
  4. Set site-wide configuration and create content & metadata (see below -- also see this set of diffs showing what files were changed to set up an example site for a user with the username "getorg-testacct")
  5. Upload any files (like PDFs, .zip files, etc.) to the files/ directory. They will appear at https://[your GitHub username].github.io/files/example.pdf.
  6. Check status by going to the repository settings, in the "GitHub pages" section
  7. (Optional) Use the Jupyter notebooks or python scripts in the markdown_generator folder to generate markdown files for publications and talks from a TSV file.

See more info at https://academicpages.github.io/

To run locally (not on GitHub Pages, to serve on your own computer)

  1. Clone the repository and made updates as detailed above
  2. Make sure you have ruby-dev, bundler, and nodejs installed: sudo apt install ruby-dev ruby-bundler nodejs
  3. Run bundle clean to clean up the directory (no need to run --force)
  4. Run bundle install to install ruby dependencies. If you get errors, delete Gemfile.lock and try again.
  5. Run bundle exec jekyll liveserve to generate the HTML and serve it from localhost:4000 the local server will automatically rebuild and refresh the pages on change.

Changelog -- bugfixes and enhancements

There is one logistical issue with a ready-to-fork template theme like academic pages that makes it a little tricky to get bug fixes and updates to the core theme. If you fork this repository, customize it, then pull again, you'll probably get merge conflicts. If you want to save your various .yml configuration files and markdown files, you can delete the repository and fork it again. Or you can manually patch.

To support this, all changes to the underlying code appear as a closed issue with the tag 'code change' -- get the list here. Each issue thread includes a comment linking to the single commit or a diff across multiple commits, so those with forked repositories can easily identify what they need to patch.

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