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R package used to analyse the Ton et al. 2022 rabbit single-cell transcriptomics data.

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scrabbitR

An R package containing utility functions used as part of the Ton et al. 20221 paper exploring rabbit development with single-cell transcriptomics.

Rabbit Development as a Model for Single Cell Comparative Genomics

Mai-Linh Ton1,2,* Daniel Keitley3,*, Bart Theeuwes2, Carolina Guibentif4, Jonas Ahnfelt-Rønne5, Thomas Kjærgaard Andreassen5, Fernando J. Calero-Nieto2, Ivan Imaz-Rosshandler6, Blanca Pijuan-Sala7, Jennifer Nichols2, Èlia Benito-Gutiérrez3, John Marioni7,8,9, Berthold Göttgens1,2

doi: https://doi.org/10.1101/2022.10.06.510971

See project webpage here for more info.

Installation

We recommend installing within a conda environment. The environment originally used in our analysis can be found here.

# Inside R session
devtools::install_github("https://github.com/dkeitley/scrabbitr")

Example usage

Comparing neighbourhoods across rabbit and mouse - link

Links

Project webpage
Project github repository
scrabbitpy

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R package used to analyse the Ton et al. 2022 rabbit single-cell transcriptomics data.

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