From aec34daf7832648cf6dcab723bc296ac8753d0e1 Mon Sep 17 00:00:00 2001 From: David K Jackson Date: Wed, 16 Sep 2020 20:10:03 +0100 Subject: [PATCH] consider directories where data may have been moved at destination --- bin/npg_upload2climb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/npg_upload2climb b/bin/npg_upload2climb index 9bcb06911..d26f7f73a 100755 --- a/bin/npg_upload2climb +++ b/bin/npg_upload2climb @@ -25,7 +25,7 @@ Readonly::Scalar my $MANIFEST_EXTENTION => q[.tsv]; Readonly::Scalar my $MANIFEST_SUFFIX => q[.climbupload]; Readonly::Scalar my $SHIFT_EIGHT => 8; Readonly::Scalar my $UPLOAD_DIR => q[upload]; -Readonly::Scalar my $UPLOADED_SAMPLES_GLOB => join q[/], $UPLOAD_DIR, q[*], q[*]; +Readonly::Scalar my $UPLOADED_SAMPLES_GLOB => q[upload{,_sample_withdrawn,_controls}/*/*]; # also consider samples previously uploaded but moved aside as controls or withdrawn Readonly::Hash my %CSV_PARSER_OPTIONS => @npg_pipeline::function::pp_archiver::CSV_PARSER_OPTIONS;