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Update of cholera-model-haiti that allows multi-year runs
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This C++ source code was used to simulate the cholera epidemic in Haiti. This work is an extension of an earlier model described in the Proceedings of the National Academy of Sciences ("Vaccination strategies for epidemic cholera in Haiti with implications for the developing world"). This new version allows for multi-year runs and rainfall-driven cholera transmission. The code requires five data files: rivers.txt, highways.txt, haitipopulation.txt, haitipopulation-dim.txt, haiti-rainfall.txt. The first two are derived from OpenStreetMap's data, which I downloaded from http://labs.geofabrik.de/haiti/2010-11-23-17-44.osm.bz2. The two population data files were derived from WorldPop's data. The rainfall data (in mm/day) is from NOAA, downloaded from ftp://ftp.star.nesdis.noaa.gov/pub/smcd/emb/f_f/hydroest/grads/centralamerica/24hour12-12. The Makefile compiles the executable "choleramodel", which can be run using the configuration files in the "sampleconfigs" directory. Model output is written to the file specified by the configuration file. The program requires the GNU Scientific library (http://www.gnu.org/software/gsl/) to compile. This work is released under the GPLv3 (see gpl.txt or http://www.gnu.org/licenses/gpl-3.0.html). Dennis Chao firstname.lastname@example.org August 2019