Pinned repositories

  1. dx-toolkit

    DNAnexus platform client libraries

    Python 38 36

  2. dx-javascript-toolkit

    DNAnexus Javascript Libraries

    JavaScript 9

  • DNAnexus platform client libraries

    Python 38 35 Updated Jan 18, 2017
  • viral-ngs

    Shell 1 15 Updated Jan 16, 2017
  • Apps to build your app/applet/asset from source in a containerized environment.

    Python 1 Updated Dec 20, 2016
  • DNAnexus Javascript Libraries

    JavaScript 9 Updated Dec 13, 2016
  • C 17 260 Updated Nov 11, 2016
  • Python Updated Oct 5, 2016
  • C library for high-throughput sequencing data formats.

    C 171 Updated Sep 22, 2016
  • URL Fetcher: Fetch a file from a URL and upload it as a File.

    Python 1 Updated Aug 25, 2016
  • mc3

    Forked from ucscCancer/mc3
    Python 6 Updated Apr 13, 2016
  • igv.js

    Forked from igvteam/igv.js

    Lightweight html5 version of the Integrative Genomics Viewer

    JavaScript 39 Updated Feb 4, 2016
  • Mongo DB Native NodeJS Driver

    JavaScript 1 1,112 Updated Feb 4, 2016
  • Style guides forked from those for Google-originated open-source projects

    HTML 2,181 Updated Jan 28, 2016
  • CSS 2 Updated Dec 29, 2015
  • RNA-Seq Quality Control: Generates QC metrics for RNA-Seq data using the RSeQC suite; a graphical report of these metrics can be viewed on the DNAnexus website

    Python 2 4 Updated Nov 12, 2015
  • GATK Pipeline: Recalibrates mapping qualities and calls variants using GATK

    C++ 4 8 Updated Sep 24, 2015
  • GATK Indel Realignment and Quality Recalibration: Deduplicates, realigns, and recalibrates a Mappings object in order to improve the quality of downstream variant calls, per the GATK best practices in variant detection.

    C++ 1 2 Updated Sep 24, 2015
  • GATK UnifiedGenotyper: Calls SNP and indel variations using GATK's UnifiedGenotyper.

    C 1 1 Updated Sep 23, 2015
  • Standards-compliant WebSocket client and server

    JavaScript 74 Updated Jun 18, 2015
  • RNA-Seq Analysis Pipeline: Maps RNA-Seq data and assesses expression using Tophat and Cufflinks

    C++ 7 10 Updated May 2, 2015
  • Pindel: Implements Pindel v.0.2.4t on mappings BAM files or Pindel input files

    C 1 1 Updated Apr 24, 2015
  • Shell Updated Feb 7, 2015
  • MediaWiki extension PdfExport

    PHP 1 Updated Dec 23, 2014
  • Client-side drafts MediaWiki extension

    PHP 1 5 Updated Dec 22, 2014
  • MediaWiki extension UploadLocal

    PHP 2 Updated Oct 11, 2014
  • BWA: Maps reads to a reference genome using the Burrows-Wheeler Aligner

    C 1 5 Updated May 8, 2014
  • Python 1 Updated Apr 16, 2014
  • Source code for some simple file-based applets

    Perl 8 5 Updated Dec 3, 2013
  • SAMtools mpileup: Variant calling for SNPs and Indels using SAMtools mpileup

    C 1 Updated Jul 24, 2013
  • Scoring

    Python 2 4 Updated Jul 18, 2013