@dnanexus

DNAnexus

Pinned repositories

  1. dx-toolkit

    DNAnexus platform client libraries

    Python 46 42

  2. dx-javascript-toolkit

    DNAnexus Javascript Libraries

    JavaScript 9 1

  • dx-toolkit

    DNAnexus platform client libraries

    Python 46 42 Updated Aug 9, 2017

  • dx_app_builder

    Apps to build your app/applet/asset from source in a containerized environment.

    Python 1 1 Updated Aug 9, 2017

  • dnanexus-example-applets

    Source code for some simple file-based applets

    Perl 9 6 Updated Aug 4, 2017

  • viral-ngs

    Forked from broadinstitute/viral-ngs

    viral-ngs

    Shell 1 18 Updated Jul 22, 2017

  • zookeeper-client

    JavaScript Updated Jul 17, 2017

  • url_fetcher

    URL Fetcher: Fetch a file from a URL and upload it as a File.

    1 Updated May 10, 2017

  • dx-javascript-toolkit

    DNAnexus Javascript Libraries

    JavaScript 9 1 Updated Dec 13, 2016

  • samtools

    Forked from samtools/samtools
    C 18 297 Updated Nov 11, 2016

  • developer-workshop

    Python 1 Updated Oct 5, 2016

  • htslib

    Forked from samtools/htslib

    C library for high-throughput sequencing data formats.

    C 199 Updated Sep 22, 2016

  • mc3

    Forked from ucscCancer/mc3
    Python 7 Updated Apr 13, 2016

  • igv.js

    Forked from igvteam/igv.js

    Lightweight html5 version of the Integrative Genomics Viewer

    JavaScript 51 Updated Feb 3, 2016

  • node-mongodb-native

    Forked from mongodb/node-mongodb-native

    Mongo DB Native NodeJS Driver

    JavaScript 1 1,186 Updated Feb 3, 2016

  • styleguide

    Forked from google/styleguide

    Style guides forked from those for Google-originated open-source projects

    HTML 1 3,047 Updated Jan 27, 2016

  • oauth2-demo

    CSS 2 1 Updated Dec 29, 2015

  • rseqc

    RNA-Seq Quality Control: Generates QC metrics for RNA-Seq data using the RSeQC suite; a graphical report of these metrics can be viewed on the DNAnexus website

    Python 2 5 Updated Nov 11, 2015

  • gatk_pipeline

    GATK Pipeline: Recalibrates mapping qualities and calls variants using GATK

    C++ 5 10 Updated Sep 23, 2015

  • gatk_recalibrate_and_realign

    GATK Indel Realignment and Quality Recalibration: Deduplicates, realigns, and recalibrates a Mappings object in order to improve the quality of downstream variant calls, per the GATK best practices in variant detection.

    C++ 1 2 Updated Sep 23, 2015

  • gatk_unifiedgenotyper

    GATK UnifiedGenotyper: Calls SNP and indel variations using GATK's UnifiedGenotyper.

    C 1 1 Updated Sep 23, 2015

  • faye-websocket-node

    Forked from faye/faye-websocket-node

    Standards-compliant WebSocket client and server

    JavaScript 80 Updated Jun 17, 2015

  • tophat_cufflinks_rnaseq

    RNA-Seq Analysis Pipeline: Maps RNA-Seq data and assesses expression using Tophat and Cufflinks

    C++ 7 10 Updated May 1, 2015

  • pindel

    Pindel: Implements Pindel v.0.2.4t on mappings BAM files or Pindel input files

    C 1 1 Updated Apr 23, 2015

  • Intro-Video

    Shell Updated Feb 6, 2015

  • mediawiki-extensions-PdfExport

    Forked from wikimedia/mediawiki-extensions-PdfExport

    MediaWiki extension PdfExport

    PHP 3 Updated Dec 23, 2014

  • MediaWiki-ClientsideDrafts

    Forked from Undev/MediaWiki-ClientsideDrafts

    Client-side drafts MediaWiki extension

    PHP 1 5 Updated Dec 23, 2014

  • mediawiki-extensions-UploadLocal

    Forked from wikimedia/mediawiki-extensions-UploadLocal

    MediaWiki extension UploadLocal

    PHP 2 Updated Oct 11, 2014

  • bwa

    BWA: Maps reads to a reference genome using the Burrows-Wheeler Aligner

    C 1 5 Updated May 8, 2014

  • velvet

    Python 1 Updated Apr 16, 2014

  • samtools_mpileup

    SAMtools mpileup: Variant calling for SNPs and Indels using SAMtools mpileup

    C 1 Updated Jul 24, 2013

  • Scoring

    Forked from StanfordBioinformatics/Scoring

    Scoring

    Python 2 5 Updated Jul 19, 2013
    • 7

    People
    @AndrewCarroll @billagee @garlicshrimp @geekdave @kpjensen @mlin @orodeh