Update copyright years and reformat licensing boilerplate

bam_cat.c

@@ -1,25 +1,7 @@
-/*
-
-bam_cat -- efficiently concatenates bam files
-
-bam_cat can be used to concatenate BAM files. Under special
-circumstances, it can be used as an alternative to 'samtools merge' to
-concatenate multiple sorted files into a single sorted file. For this
-to work each file must be sorted, and the sorted files must be given
-as command line arguments in order such that the final read in file i
-is less than or equal to the first read in file i+1.
-
-This code is derived from the bam_reheader function in samtools 0.1.8
-and modified to perform concatenation by Chris Saunders on behalf of
-Illumina.
-
+/*  bam_cat.c -- efficiently concatenates bam files.
 
-########## License:
-
-The MIT License
-
-Original SAMtools work copyright (c) 2008-2009 Genome Research Ltd.
-Modified SAMtools work copyright (c) 2010 Illumina, Inc.
+    Copyright (C) 2008-2009, 2011-2013 Genome Research Ltd.
+    Modified SAMtools work copyright (C) 2010 Illumina, Inc.
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal
@@ -28,17 +10,28 @@ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 copies of the Software, and to permit persons to whom the Software is
 furnished to do so, subject to the following conditions:
 
-The above copyright notice and this permission notice shall be included in
+The above copyright notices and this permission notice shall be included in
 all copies or substantial portions of the Software.
 
 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-THE SOFTWARE.
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+DEALINGS IN THE SOFTWARE.  */
 
+/*
+bam_cat can be used to concatenate BAM files. Under special
+circumstances, it can be used as an alternative to 'samtools merge' to
+concatenate multiple sorted files into a single sorted file. For this
+to work each file must be sorted, and the sorted files must be given
+as command line arguments in order such that the final read in file i
+is less than or equal to the first read in file i+1.
+
+This code is derived from the bam_reheader function in samtools 0.1.8
+and modified to perform concatenation by Chris Saunders on behalf of
+Illumina.
 */
 
 #include <stdio.h>