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SpatialKappa

14 September 2012

Copyright © 2012 DemonSoft.org <http://www.demonsoft.org/>

INTRODUCTION

This project contains an implementation of a syntactic extension of Kappa to allow expression of location and transport in models. A user manual is available here.

Feel free to add bug reports or feature requests here.

LICENSE

This project is licenced under the GNU Lesser General Public Licence Version 3 (LGPLv3), included as <LICENSE.html>.

Included third party libraries are released under their respective licences, listed below:

Library Home site License
Antlr v3.2 http://www.antlr.org http://www.antlr.org/license.html
jlfgr v1.0 http://java.sun.com/developer/techDocs/hi/repository/ Included in archive
commons io v1.4 http://commons.apache.org/io/ http://commons.apache.org/io/license.html
jcommon v1.0.16 http://www.jfree.org/jcommon/ http://www.gnu.org/licenses/lgpl.html
jfreechart v1.0.13 http://www.jfree.org/jfreechart/ http://www.gnu.org/licenses/lgpl.html
EasyMock v3.0 http://easymock.org/ http://easymock.org/License.html
CgLib v2.2 http://cglib.sourceforge.net/ http://www.apache.org/foundation/licence-FAQ.html
Objenesis v1.2 http://objenesis.googlecode.com/svn/docs/index.html http://objenesis.googlecode.com/svn/docs/license.html
ASM v3.3.1 http://asm.ow2.org/index.html http://asm.ow2.org/license.html

ACKNOWLEDGEMENTS

The development of Spatial Kappa was funded in part by SynthSys. SynthSys is a Centre for Integrative Systems Biology (CISB) funded by BBSRC and EPSRC, reference BB/D019621/1.

DISCLAIMER

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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An implementation of spatial language extensions to Kappa

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