This should work

[muschellij2]

Have the code for resampleImageToTarget , but I think that may screw up the origins. Overall this works, the package should check out, and the resulting segmentation is "okay". The registrations seem off back to native though.

[dorianps]

Will need to try it in the evening, busy day.

…

On Tue, Nov 6, 2018, 12:52 AM John Muschelli ***@***.*** wrote: Have the code for resampleImageToTarget , but I think that may screw up the origins. Overall this works, the package should check out, and the resulting segmentation is "okay". The registrations seem off back to native though. ------------------------------ You can view, comment on, or merge this pull request online at: #16 Commit Summary - fixing some fo the namespace and such - fixing the linda - removed tests and documented asym mask - added asym rd and voxchunk arg - using resampleImagetoTarget instead - fixing n4_skull_strip - reverting back to resampleImage - maybe thats OK? - fix nm again - removing LINDA files as they do not pass R CMD check File Changes - *M* DESCRIPTION <https://github.com/dorianps/LINDA/pull/16/files#diff-0> (6) - *M* NAMESPACE <https://github.com/dorianps/LINDA/pull/16/files#diff-1> (10) - *M* R/asymmetry_mask.R <https://github.com/dorianps/LINDA/pull/16/files#diff-2> (22) - *D* R/compose_warping.R <https://github.com/dorianps/LINDA/pull/16/files#diff-3> (26) - *M* R/getLesionFeatures.R <https://github.com/dorianps/LINDA/pull/16/files#diff-4> (5) - *M* R/linda_predict_function.R <https://github.com/dorianps/LINDA/pull/16/files#diff-5> (56) - *D* R/mrvnrfs_chunks.R <https://github.com/dorianps/LINDA/pull/16/files#diff-6> (399) - *A* R/mrvnrfs_predict_chunks.R <https://github.com/dorianps/LINDA/pull/16/files#diff-7> (206) - *M* R/n4_skull_strip.R <https://github.com/dorianps/LINDA/pull/16/files#diff-8> (3) - *M* R/run_prediction.R <https://github.com/dorianps/LINDA/pull/16/files#diff-9> (23) - *D* man/LINDA.mrvnrfs_chunks.Rd <https://github.com/dorianps/LINDA/pull/16/files#diff-10> (82) - *A* man/asymmetry_mask.Rd <https://github.com/dorianps/LINDA/pull/16/files#diff-11> (26) - *R* man/linda_mrvnrfs.predict_chunks.Rd <https://github.com/dorianps/LINDA/pull/16/files#diff-12> (17) - *M* original/linda_predict.R <https://github.com/dorianps/LINDA/pull/16/files#diff-13> (45) - *M* original/mrvnrfs_chunks.R <https://github.com/dorianps/LINDA/pull/16/files#diff-14> (227) - *A* original/mrvnrfs_chunks_predict.R <https://github.com/dorianps/LINDA/pull/16/files#diff-15> (164) - *D* tests/testthat.R <https://github.com/dorianps/LINDA/pull/16/files#diff-16> (4) Patch Links: - https://github.com/dorianps/LINDA/pull/16.patch - https://github.com/dorianps/LINDA/pull/16.diff — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#16>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AIqafTLXxrIvRgbPgzjfy9BAn79nkGFvks5usSOXgaJpZM4YPzIO> .