Spatially-explicit occupancy modeling with the spOccupancy R package

Jeffrey W. Doser and Elise F. Zipkin

Workshop Website

The Wildlife Society Annual Conference 2023

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Repository Directory

• lecture-slides.pdf contains the complete set of lecture slides.
• exercises/exercise-1 contains all data and R code for Exercise 1, which displays single-species spatial and nonspatial occupancy models by exploring amphibian occupancy in the fragmented Brazilian Atlantic Forest.
• exercises/exercise-2 contains all data and R code for Exercise 2, which displays multi-species spatial and nonspatial occupancy models using data from 10 songbird species in Switzerland.
• exercises/exercise-3 contains all data and R code for Exercise 3, which shows how to fit multi-season spatial and nonspatial occupancy models in spOccupancy using data on the Wood Thrush from 2000-2009 across the eastern US.