Code and data for analyses in Adams et al. "Lineage-specific mutational clustering in protein structures predicts evolutionary shifts in function" (Bioinformatics, 2017, DOI: 10.1093/bioinformatics/btw815)
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code
selectomeData
README.md

README.md

EvoClust3D

Detect spatially clustered substitution in protein phylogenies

  • /code contains all Python code for the EvoClust3D program and associated analyses in Adams et al
  • /selectomeData contains a zipped data table (~70 MB uncompressed) of results from the Selectome analysis. Specifically, this contains table contains P3D values and other statistics for all branches and trees for Selectome vertebrate protein phylogenies