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Overview

aneuvis is a web-based tool to automatically analyze numerical chromosomal variation in single cells.

A video tutorial demonstrating the usage of aneuvis is available.

A schematic of the features of aneuvis is shown below.

img1

Usage

aneuvis is available to use at dpique.shinyapps.io/aneuvis/

Local installation

To run aneuvis locally, first clone this repo to your computer:

git clone https://github.com/dpique/aneuvis.git

Then, change directories into the aneuvis directory:

cd aneuvis/

Lastly, load the app. Ensure that Shiny and the required libraries are installed (see header of app.R for required R packages.)

R -e "shiny::runApp('app.R')"

aneuvis was built using R version 3.4.3 and shiny version 1.0.5 and is freely available under a GPLv3 license.

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Web-based visualization of aneuploidy in single cells

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