@draeger draeger released this Oct 19, 2015 · 136 commits to master since this release

Assets 5

This release supports BiGG Models database from October 17th 2015, including the following features:

  • Writes notes into SBML document and Model for informative display of SBML files in a web browser.
  • Subsystems using the groups extension for SBML
  • FBC version 2 with check if all criteria for strict FBC are satisfied
  • Atom balance check
  • Optional SBML validation (through web service at sbml.org)
  • Output compression
  • Error logging
  • Compartment assignment checking and correction
  • Pseudoreaction annotation and update of reaction ids from *_sink_* to *_SK_*
  • Annotation of each SBML component with third-party resources
  • Determination of component roles and SBO term assignment
  • and many more...

Currently not supported are the following annotations of gene products:

  • refseq_name
  • refseq_old_locus_tag
  • refseq_orf_id
  • refseq_synonym