@draeger draeger released this Apr 30, 2016 · 112 commits to master since this release

Assets 5

New features:

  • Several improvements were made in the COBRA parser:
    • A source of an IndexOutOfBoundsExceptions was solved
    • Error messages have been improved.
    • Special cases of common errors in mat files were integrated and are now caught rather than causing failure.
  • The JSBML version has been updated to revision 2492.
  • It is now possible to disable the use of URIs for the annotation of models that are not (yet) included in the MIRIAM registry using the new command-line argument --include-any-uri=<true|false>. If the given value is set to false, only those URLs will be included that contain the prefix http://identifiers.org/.
  • External third-party libraries are now included as local Maven repositories in order to simplify the building process for developers. Thanks to @matthiaskoenig for this contribution.
  • When creating groups to represent COBRA subsystems the new SBO term subsystem.

For documentation purposes, an overview html file has been created and the POM file was slightly updated.

Bug fixes:

  • A typo was fixed in the model notes file.