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Simple and fast histogramming in python via pybind11 and OpenMP.
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README.md

pygram11

builds.sr.ht status Documentation Status PyPI version Conda Forge DOI Code style: black

Simple and fast histogramming in python via pybind11 and (optionally) OpenMP.

pygram11 provides fast functions for calculating histograms (and their sums-of-weights squared). The API is very simple, check out the documentation (you'll also find some benchmarks there) and my blog post.

Installing

pygram11 requires only NumPy and pybind11 (and therefore a C++ compiler with C++11 support).

From conda-forge

conda install pygram11 -c conda-forge

Builds on conda-forge will have OpenMP available.

From PyPI

Note: When using PyPI (or source), pybind11 must be installed explicitly before pygram11 (because setup.py uses pybind11 to determine include directories; not an issue if using the conda-forge build).

$ pip install pybind11 ## or `conda install pybind11`
$ pip install pygram11

From Source

$ git clone https://github.com/drdavis/pygram11.git
$ pip install pybind11
$ cd pygram11
$ pip install .

In Action

A fixed bin width histogram of weighted data in one dimension, accelerated with OpenMP:

>>> x = np.random.randn(10000)
>>> w = np.random.uniform(0.8, 1.2, 10000)
>>> h, sw2 = pygram11.histogram(x, bins=40, range=(-4, 4), weights=w, omp=True)
>>> stat_err = np.sqrt(sw2)

A variable bin width histogram in two dimensions:

>>> x = np.random.randn(10000)
>>> y = np.random.randn(10000)
>>> xbins = [-2.0, -1.0, -0.5, 1.5, 2.0]
>>> ybins = [-3.0, -1.5, -0.1, 0.8, 2.0]
>>> h = pygram11.histogram2d(x, y, bins=[xbins, ybins])

If there is something you'd like to see in pygram11, please open an issue or pull request.

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