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Itoshi NIKAIDO edited this page Nov 19, 2013 · 11 revisions
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Welcome to the genesearchr wiki!

This R package can fast full-text searches NCBI RefSeq, UniProt-KB and genome DNA sequence from GGRNA/GGGenome and G-links Web API.

Install

$ sudo R
> source("http://bioconductor.org/biocLite.R")
> biocLite("GenomicRanges")
> install.packages("devtools")
> install.packages("roxygen2")
>
> library(devtools)
> install_github("genesearchr", "dritoshi")

Usage

library("genesearchr")

## RefSeq
my.hs.gene <- refSeqSearch(query = "NM_001518", species = "hs")
my.mm.gene <- refSeqSearch(query = "homeobox",  species = "mm")

## UniProt-KB
my.gid.gene <- uniprotSearch(query = "GeneID:93986")
my.eco.gene <- uniprotSearch(query = "eco:b2699")

## Genome DNA Sequence
my.mm10.dna <- genomeSearch(query = "TTCATTGACAACATTGCGT", db = "mm10", k = 2)

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