Network-based Gene Set Analysis
This package carries out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.
You can install it directly from GitHub through
library(devtools) devtools::install_github("drjingma/netgsa", build_vignettes=T)
Ma, Jing, Shojaie, Ali and Michailidis, George. (2016) Network-based pathway enrichment analysis with incomplete network information. Bioinformatics https://doi.org/10.1093/bioinformatics/btw410