Python scripts for processing reads
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H99_pipeline.sh
Heteroplasmy makefile.ipynb
README.md
align_reads.py
collect_reads.py
dist_hist.py
fetch_ebi_reads.py
qual_trim.py
variant_call.py

README.md

processing_scripts

Python scripts for processing short read data sets in fastq format
Assumes data will come from EBI's ENA in many cases