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Transcriptome sequencing of two Lake Baikal endemic (Eulimnogammarus verrucosus and E. cyaneus) and one Holarctic (Gammarus lacustris) transcriptome species from the Baikal region subjected to different stressors: scripts
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CBPD_phenanthrene_scripts
misc_scripts
plotting_scripts
GO_enrichment_from_DESeq_results.R
README.md
csv2xlsx.R
de_functions_new+decontamination.R
draw_expression_level_gene.R
predict_MTs.R
salmon.sh
taxonomy.R

README.md

EveEcyGlaDE

Transcriptome sequencing of two Lake Baikal endemic (Eulimnogammarus verrucosus and E. cyaneus) and one Holarctic (Gammarus lacustris) transcriptome species from the Baikal region subjected to different stressors: scripts.

Logical steps

  • salmon.sh for read alignment.
  • de_functions_new+decontamination.R for DE from (functions based on the DESeq2 package).
  • GO_enrichment_from_DESeq_results.R for GO enrichment from DESeq results.
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