interact package provide an implementation of INtERAcT (Interaction networks from vector representation of words) together with a selection of different metrics. Additionally, it exposes various utilities parse data from STRING DB, UniProt and files in gmt format.
Setup of the virtual environment
We strongly recommend to work inside a virtual environment (
Create the environment:
python3 -m venv venv
pip3 install -r requirements.txt
The module can be installed either in editable mode:
pip3 install -e .
Or as a normal package:
pip3 install .
Check the folder
examples for a quick start on inferring interaction from an embedding using