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Commits on Apr 18, 2013
  1. Prevent MSVC from mistakenly labeling methods as private.

    git-svn-id: https://svn.salilab.org/imp/trunk@17518 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 18, 2013
  2. Update for removed test.

    git-svn-id: https://svn.salilab.org/imp/trunk@17517 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 18, 2013
  3. Remove example for now that doesn't demonstrate anything beyond the 3…

    …sfd one.
    
    git-svn-id: https://svn.salilab.org/imp/trunk@17516 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 18, 2013
  4. Put remaining example inputs in more sensible locations.

    git-svn-id: https://svn.salilab.org/imp/trunk@17515 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 18, 2013
  5. Remove function that thoroughly confuses MSVC with latest boost; it i…

    …sn't
    
    used anyway.
    
    
    git-svn-id: https://svn.salilab.org/imp/trunk@17514 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 18, 2013
Commits on Apr 17, 2013
  1. remove outdated graphs

    git-svn-id: https://svn.salilab.org/imp/trunk@17513 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
  2. Add missing hydrogen type.

    git-svn-id: https://svn.salilab.org/imp/trunk@17512 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  3. Use markdown link rather than \external.

    git-svn-id: https://svn.salilab.org/imp/trunk@17511 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  4. Clean up docs.

    git-svn-id: https://svn.salilab.org/imp/trunk@17510 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  5. isd new expensive test

    git-svn-id: https://svn.salilab.org/imp/trunk@17509 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    barak@SALILAB.ORG committed Apr 17, 2013
  6. cmake stuff

    git-svn-id: https://svn.salilab.org/imp/trunk@17508 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    barak@SALILAB.ORG committed Apr 17, 2013
  7. more medium / expensive tests

    git-svn-id: https://svn.salilab.org/imp/trunk@17507 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    barak@SALILAB.ORG committed Apr 17, 2013
  8. Quiet warning about RotamerLibrary not being used.

    git-svn-id: https://svn.salilab.org/imp/trunk@17506 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  9. Own the RotamerLibrary.

    git-svn-id: https://svn.salilab.org/imp/trunk@17505 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  10. make module pages a subpage of the modules list to clean up the files…

    … index
    
    git-svn-id: https://svn.salilab.org/imp/trunk@17504 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
  11. remove space in version

    git-svn-id: https://svn.salilab.org/imp/trunk@17503 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
  12. Don't trim first character of Windows path.

    git-svn-id: https://svn.salilab.org/imp/trunk@17502 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  13. Add spelling exception.

    git-svn-id: https://svn.salilab.org/imp/trunk@17501 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  14. We now have a workaround for older numpy without slogdet.

    git-svn-id: https://svn.salilab.org/imp/trunk@17500 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  15. cmake updates

    git-svn-id: https://svn.salilab.org/imp/trunk@17499 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    barak@SALILAB.ORG committed Apr 17, 2013
  16. Get nightly build from git rather than SVN.

    git-svn-id: https://svn.salilab.org/imp/trunk@17498 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  17. one more expensive

    git-svn-id: https://svn.salilab.org/imp/trunk@17497 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    barak@SALILAB.ORG committed Apr 17, 2013
  18. expensive to medium test

    git-svn-id: https://svn.salilab.org/imp/trunk@17496 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    barak@SALILAB.ORG committed Apr 17, 2013
  19. turn em test to expensive to prevent timeout

    git-svn-id: https://svn.salilab.org/imp/trunk@17495 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    barak@SALILAB.ORG committed Apr 17, 2013
  20. turn two multifit tests to expensive to prevent timeout

    git-svn-id: https://svn.salilab.org/imp/trunk@17494 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    barak@SALILAB.ORG committed Apr 17, 2013
  21. add check for missing descriptions.py

    otherwise, the error messages are kind of inscrutable. Close iss #277
    
    git-svn-id: https://svn.salilab.org/imp/trunk@17491 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
  22. sync RMF to 368996561d295091563e578a62320ce9e2989d25

    git-svn-id: https://svn.salilab.org/imp/trunk@17490 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
  23. make setup scripts a bit more robust

    git-svn-id: https://svn.salilab.org/imp/trunk@17489 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
  24. account for cached scoring function

    git-svn-id: https://svn.salilab.org/imp/trunk@17488 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
  25. remove redundant test for testing content of data folder

    git-svn-id: https://svn.salilab.org/imp/trunk@17487 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    barak@SALILAB.ORG committed Apr 17, 2013
  26. No biological systems any more.

    git-svn-id: https://svn.salilab.org/imp/trunk@17486 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 17, 2013
  27. add to change log

    git-svn-id: https://svn.salilab.org/imp/trunk@17482 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
  28. rewrite setup_git in python

    and add support for running it in a module not in the main IMP repository
    
    git-svn-id: https://svn.salilab.org/imp/trunk@17481 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
  29. minor readme cleanups

    git-svn-id: https://svn.salilab.org/imp/trunk@17480 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    drussel@SALILAB.ORG committed Apr 17, 2013
Commits on Apr 16, 2013
  1. If no good scoring solution is returned, report an identity (not garb…

    …age)
    
    transformation. Closes issue #214.
    
    
    git-svn-id: https://svn.salilab.org/imp/trunk@17479 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
    ben@SALILAB.ORG committed Apr 16, 2013