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Various useful scripts for OMERO
Python
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Damir Sudar Damir Sudar
Damir Sudar and Damir Sudar spelling error fixed
Latest commit f538929 Nov 10, 2016
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Dataset_To_Well.py Improved argument description Nov 8, 2016
HCS_Render_Settings.py Replaced HCS_Rendering_Settings with new version Nov 7, 2016
README.md
Wells_To_Plate.py Updates to Wells_To_Plate.py and rename Nov 10, 2016

README.md

OMEROscripts

Dataset_To_Well.py: moves all images in a single Dataset to a single specified Well in a Plate as fields in that Well. If the Plate already exists, provide the Plate ID and if it doesn't yet exist, provide a name to be given to the new Plate and get back the Plate ID for that new Plate.

Wells_To_Plate.py: generate (a) Plate(s) from all the Fields in (a) Well(s). Optionally, add the new Plate to a Screen.

HCS_Render_Settings.py: apply new rendering settings to all images in a list of Screens or Plates in bulk and has the following options:

  1. reset to imported (all others below are then ignored),
  2. only change the assigned colors per channel (without changing the min/max),
  3. turn on/off certain channel's visibility,
  4. set the min/max from an example image provided.
    In principle one should be able to apply multiple options simultaneously but there's a bug somewhere that causes some strange behaviour.
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