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Pipeline for analyzing E. faecalis OG1RF TnSeq data
R Python
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.gitattributes
CompareSets.R
E_faecalis.fasta
E_faecalis.fasta.amb
E_faecalis.fasta.ann
E_faecalis.fasta.bwt
E_faecalis.fasta.pac
E_faecalis.fasta.sa
E_faecalis_Full_Annot.csv
README.md
TA_locations.tab
final_comparisons.pbs
pattern_find.py
site_filter.R
transposon_pipeline.pbs

README.md

This is the pipeline used to analyze data generated from TnSeq using E. faecalis OG1RF. This code was originally developed by Dr. Joshua Baller at the Minnesota Supercomputing Institute at the University of Minnesota, Twin Cities. It was published in .

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