/Fungal-Foray

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Commits on Sep 28, 2011

  1. started work on including NCBI taxonomy in iTol and quanitfying 'excl… 

    …usivity' of host-fungi relationships
    committed Sep 28, 2011
    99d7026
Commits on Sep 23, 2011

  1. new property for FungalRecord giving taxID, filtered alignments get t… 

    …axID as record id
    committed Sep 23, 2011
    001049a
Commits on Sep 19, 2011

  1. including manuka and kanuka in filtered samples and documented this

    committed Sep 19, 2011
    90e9ab3
Commits on Sep 11, 2011

  1. delete old attempt at fungal record file

    committed Sep 11, 2011
    efd7135

  2. cleaned up the plot.r script and added comments

    committed Sep 11, 2011
    05a813a

  3. Merge branch 'master' of github.com:dwinter/Fungal-Foray

    committed Sep 11, 2011
    fddb170

  4. using colourBrewer clours to shade tree branches

    committed Sep 11, 2011
    b4b3478

  5. Merge pull request #1 from pitakakariki/patch-1 

    Clean up of plot.r function thanks to pitakakariki 
"It turns out that in my spare time I make random suggestions about people"
    committed Sep 11, 2011
    97d7d69
  6. @pitakakariki

    It turns out that in my spare time I make random suggestions about pe… 

    …ople's code.
    pitakakariki committed Sep 11, 2011
    fd5520b
Commits on Sep 8, 2011

  1. explaining the alignment in README

    committed Sep 8, 2011
    9eb9b61

  2. the FIRST WORD in readme was a typo *sigh*...

    committed Sep 8, 2011
    d180c1b

  3. clean up doc string for Fungi.py

    committed Sep 8, 2011
    379c67a

  4. making image in README work w/ github

    committed Sep 8, 2011
    75475d0

  5. typos in README

    committed Sep 8, 2011
    007f95c

  6. included .gitignore

    committed Sep 8, 2011
    15da0a2

  7. removed .pyc files

    committed Sep 8, 2011
    a14ae1d

  8. remove deleted file (if I get git...)

    committed Sep 8, 2011
    f18eb69

  9. renamed fungal record

    committed Sep 8, 2011
    6002f1d

  10. cleaned up strucutre a bit

    committed Sep 8, 2011
    df9c2eb

  11. restrutured the dir

    committed Sep 8, 2011
    6f97196

  12. it works! - plot with shaded tips made :)

    committed Sep 8, 2011
    94b1d5f
Commits on Sep 6, 2011

  1. fixed "on target" function, re-ran alignment

    committed Sep 6, 2011
    c716e77

  2. ...and records with host in the name

    committed Sep 6, 2011
    798f127

  3. filtered records to have just nothofagus and pine as hosts

    committed Sep 6, 2011
    c923d44

  4. Got rid of old files

    committed Sep 6, 2011
    db46726

  5. Got the file filter sorted, and a new object to represent records

    committed Sep 6, 2011
    abb0e25
Commits on Sep 5, 2011

  1. starting with sequences from GB

    committed Sep 5, 2011
    af5f0d7