🔬 A repository of resources related to citizen, community-based and/or non-institutional science
Switch branches/tags
Nothing to show
Clone or download
Latest commit bdece09 Apr 25, 2018

README.md

Digital Tools for Citizen Science

Below is a curated list of awesome software and other resources to enable those who want to use scientific tools to empower communities and/or practice various forms of non-institutional science. It is largely inspired by this repository listing digital tools for activists. Feel free to share suggestions. If you add software to the list, free and open-source software is strongly encouraged over proprietary software.

Awesome

Contents

Software

Lab Equipment Software

  • Grafana - Create a dashboard (online if you wish) that visualizes your experimental data.
  • mMass - Open-source software for mass spectrometers.
  • Stellarium - Open-source planetarium software.

Modeling and Computation

  • OpenSCAD - 3D modeling software.
  • SageMath - Open-source cloud-based computation (similar to MATLAB and Mathematica).
  • GNU Octave - Free software numerical computation program, similar to MATLAB.
  • Dia - Open-source software for making diagrams.
  • Gephi - Open graph visualization platform.
  • QGIS - Open GIS software.
  • Mineways - a tool for turning Minecraft model files into 3D-printable .stl files
  • ALOHA - A piece of software disributed by the EPA that models the threat zone for various types of chemical spill and explosion hazards.
  • vegan - R package for statistical work in community ecology.

Publishing , Collaboration and Organization

  • Zotero - Open-source citation management software.
  • TiddlyWiki - Easily create your own wikis to organize information.
  • Evergreen ILS - Software for managing a library of books (and the loaning process).
  • ISLE - Open-source laboratory equipment inventory management system developed by NASA.
  • GanttProject - Productivity tool for scheduling tasks and making Gantt charts.
  • Open Science Framework - Open-source collaborative project manager for scientific research.
  • Calibre - eBook management software.
  • LibraryThing - an online platform for organizing your library.
  • PECE - The Platform for Experimental and Collaborative Ethnography. This project provides an online platform for academic collaboration that helps keep track of complex attribution of credit. It is geared toward anthropologists but is expanding to become more broad.
  • RapidPro - An open-source platform for building scalable applications that users can interact with via SMS.

Educational

  • Light and Matter - Benjamin Crowell's free-to-download, cheap-to-buy open source physics textbooks.
  • OpenStax - Repository of open-licensed and collaboratively-edited textbooks on many basic subjects. You can download them as ebooks or order print copies.
  • PhET Simulations - CU Boulder interactive physics and chemistry simulations.
  • United Diversity Co-op Library - A vast library of interesting textbooks and other resources in PDF form on such topics as permaculture, agriculture, economics, crafts and activism.
  • Microbe Wiki - A large student-edited multi-institutional wiki for microbiology.
  • OpenCulture Textbooks - The textbook section of a website dedicated to the open sharing of information.
  • Free Tech Books - Free ebooks (mostly computer science and engineering).
  • OpenWetWare - A site that maintains a list of bio lab protocols as well as an electronic lab notebook for team use.

Tools and Equipment

Biology and Chemistry

  • The ODIN - A distributor of affordable DIY biology equipment.
  • Bento Box - A low-cost PCR workstation from Bento Lab.
  • OpenTrons - An open-source liquid-handling robot.
  • OpenPCR - An open-source PCR thermocycler.
  • SGD - Stanford University's Saccharomyces Genome Database.
  • BLAST - Search tool for local alignment.
  • IORodeo - Sells a cheap open-source potentiostat, a colorimeter, and some other equipment.
  • BioSurplus - A supplier of used bio lab equipment.
  • DremelFuge - A biology centrifuge that takes the form of a dremel attachment.
  • Paperfuge - An ultra-low cost, hand-powered centrifuge inspired by the mechanics of a whirligig toy.
  • Ministat - A DIY chemostat.
  • MinION - An affordable, portable DNA/RNA sequencer.
  • SpikerBox - A bioamplifier for DIY neuroscience.

Environmental Science and Geology

3D Printing and Fabrication

Electronics

  • C.H.I.P - A $9 Linux computer.
  • Raspberry Pi Zero - The cheapest, smallest Raspberry Pi ($5).
  • Particle Electron - Raspberry Pi-like microcontroller for connecting the devices you make to the cellular network.
  • SparkFun - A company selling all sorts of electronics for DIY projects, including sensors.
  • Red Pitaya - Open-source tool with multiple signal processing functions, such as an oscilloscope, spectrum analyzer, signal generator, and more.
  • Podo - A stickable, hi-resolution Bluetooth camera.

Other

Publishing and Doing Research

  • Citizen Science: Theory and Practice - An open-access, peer-reviewed journal dedicated to discussion about methods in citizen science.
  • Scholar Subreddit - A great place to request help getting access to scientific papers that are beyond paywalls.
  • LibGen - An online tool for gaining access to scientific articles that are normally beyond paywalls.
  • SciHub - Another site for gaining access to science papers that are normally behind paywalls.
  • Public Library of Science (PLOS) - Nonprofit organization that publishes open-access journals and also advocates for openness and tranparency in science.
  • arXiv - A Cornell-supported site for sharing and discussing early drafts of scientific papers (mostly physics and math).
  • Directory of Open Access Journals - Over 9000 journals listed.
  • Investigative Dashboard - A tool for researchers, especially journalists, to share documents and findings.

Literature

Citizen Science Theory

Citizen Science Practice

Citizen Science Spaces and Projects

Genetics/Biohacking

  • Genspace - One of the oldest and most successful DIY Bio labs, located in Brooklyn, NYC.
  • BioCurious - The first biohacking space in the world, located in Sunnyvale, CA
  • HiveBio - Seattle community bio lab.
  • SynthTechBio Network - Latin American biohackers' network.
  • Four Thieves Vinegar Collective - A group working on DIY pharma-hacking projects, such as a $30 alternative to $600 epi-pens.

Environment

Other

Art and Science Spaces

Community-driven science labs tend to operate differently from conventional labs. Their member-led and curiosity-driven approach often produces work that breaks down conventional disciplines, such as bio-art. This section is for listing spaces that may or may not be conventional makerspaces but capture this spirit of interdisciplinarity.

  • Coalesce: Center for Biological Arts - A bioart studio-lab at SUNY Buffalo.
  • MIT Media Lab - An interdisciplinary art, science and technology research center that is part of the Massachusetts Institute of Technology.
  • Interspecifics - A Mexico City-based collective working on projects at the intersection of art and science, especially related to biologically-generated sound.
  • Center for Science and the Imagination - A collaboration between artists and scientists at Arizona State University.
  • STEM to STEAM - An initiative out of Rhode Island School of Design to bring more art and design into STEM education.
  • The Waag Society - An institute for collaborative art, science and technology based in the Netherlands.

Funding and Support

Financial Resources

Other Types of Support

Conferences and Events

  • Innovative Citizen - An annual citizen science festival in the Ruhr area, Germany, with an emphasis on organic fabrication, bio-hacking, mobile agriculture, and sustainability in urban ecosystems.
  • iGEM - Student synthetic biology competition with connections to many DIY bio labs.
  • Biofabricate - A design-focused annual conference that focuses on biotechnology-affiliated design, materials, and techniques.
  • Biodesign Challenge - Student design competition that concentrates on envisioning the future application of biotechnology.

Other Resources

Questions and Knowledge Gaps

  • Ethics in research are often overseen by federal agencies or institutional review boards (IRBs). Is there a bottom-up, citizen-driven alternative to this?

How do I contribute to this list?

Have an idea of a tool that should be on this list? Here's how you can add it:

  • Familiar with GitHub? Send a pull request with your suggestions. Please also see the contribution guidelines.
  • Not familiar with GitHub? You can leave a comment on this page by clicking on the Issues tab on the right and adding a New Issue (that's just like a comment). You'll need to create a GitHub account first.

License

No copyright intended.

CC0

To the extent possible under law, Dylan Rees has waived all copyright and related or neighboring rights to this work.