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language: r
sudo: required
dist: trusty
bioc_required: true
services:
- docker
cache: packages
warnings_are_errors: true
addons:
apt:
packages:
- libudunits2-dev # units > ggforce > ggraph > patchwork > dynplot
- libssh-dev # ssh > qsub
git:
submodules: false
before_install:
- source <(curl -sSL https://raw.githubusercontent.com/dynverse/travis_scripts/master/helper.sh)
- install_hdf5
- cd package
install:
- install_cran devtools covr
- install_withdeps
after_success:
- R -e 'covr::codecov()'
jobs:
include:
- stage: Cache a few packages already
install:
- install_cran devtools covr tidyverse
- install_cran Rcpp RcppArmadillo RcppEigen SingleCellExperiment
script:
- echo Skip
after_success:
- echo Skip
- stage: prepare cache
script:
- echo Skip
after_success:
- echo Skip
- stage: test
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