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update results, fix #26

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zouter committed Mar 4, 2019
1 parent 4b47b5b commit 9696496dcb33bc2a8de1ebf62e3f2d8807027f76
Showing with 14 additions and 40 deletions.
  1. +12 βˆ’39 README.md
  2. +1 βˆ’1 results
  3. +1 βˆ’0 scripts/12-manuscript/render_results.R
@@ -25,7 +25,7 @@ This repo contains the scripts to reproduce the manuscript
> <a href='https://github.com/saeyslab'><img src='https://github.com/dynverse/dynmethods/raw/master/man/figures/github_logo.png' height='16'></a>
> [bioRxiv:276907](https://www.biorxiv.org/content/early/2018/03/05/276907)
> [doi:10.1101/276907](https://doi.org/10.1101/276907)
> [![altmetric](https://badges.altmetric.com/?size=100&score=118&types=btttttwg&style=bar)](https://altmetric.com/details/33972849)
> [![altmetric](https://badges.altmetric.com/?size=100&score=120&types=btttttwg&style=bar)](https://altmetric.com/details/33972849)
*Note that this preprint is currently **very** outdated. An updated
manuscript will be published soon, you can browse below for more recent
@@ -112,7 +112,6 @@ In R, you can install the dependencies of dynbenchmark from github
using:

``` r
# install.packages("devtools")
devtools::install_github("dynverse/dynbenchmark/package")
```
@@ -135,56 +134,30 @@ CE](https://store.docker.com/editions/community/docker-ce-desktop-windows),
older Windows installations require the [Docker
toolbox](https://docs.docker.com/toolbox/overview/).

You can test whether docker is correctly installed by running:
You can test whether docker is correctly installed by
running:

``` r
dynwrap::test_docker_installation(detailed = TRUE)
```

```
## βœ” Docker is installed
```

```
## βœ” Docker daemon is running
```
## βœ” Docker is installed

```
## βœ” Docker daemon is running

## βœ” Docker is at correct version (>1.0): 1.39
```
## βœ” Docker is at correct version (>1.0): 1.39

```
## βœ” Docker is in linux mode

## βœ” Docker is in linux mode
```
## βœ” Docker can pull images

```
## βœ” Docker can run image

## βœ” Docker can pull images
```
## βœ” Docker can mount temporary volumes

```
## βœ” Docker test successful -----------------------------------------------------------------

## βœ” Docker can run image
```

```
## βœ” Docker can mount temporary volumes
```

```
## βœ” Docker test successful -----------------------------------------------------------------
```

```
## [1] TRUE
```
## [1] TRUE

This command will give helpful tips if some parts of the installation
are missing.
@@ -7,6 +7,7 @@ library(tidyverse)
readme_paths <- c(
fs::dir_ls("results", regexp = "README\\.Rmd", recursive = TRUE)
# fs::dir_ls(result_file("", experiment = "03-methods"), regexp = "README\\.Rmd", recursive = TRUE)
# "results/README.Rmd"
)

walk(readme_paths, function(readme_path) {

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