Skip to content
Branch: master
Find file History
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
..
Failed to load latest commit information.
01-datasets
02-metrics
03-methods
04-method_testing
05-scaling
06-benchmark
07-stability
08-summary
09-guidelines also save benchmark metrics in dynguidelines Mar 21, 2019
10-benchmark_interpretation
11-example_predictions
12-manuscript
varia
README.Rmd
README.md

README.md

Scripts

The scripts folder contains all the scripts necessary to fully reproduce the benchmarking manuscript in chronologically ordered subfolders. Each subfolder contains a readme file with further explanations of the different scripts and what they do:

# script/folder description
1 πŸ“datasets Dataset processing and characterisation
2 πŸ“metrics Metrics for comparing two trajectories
3 πŸ“methods Trajectory inference methods
4 πŸ“method_testing Method testing
5 πŸ“scaling Scalability of methods
6 πŸ“benchmark Benchmarking of TI methods on real and synthetic data
7 πŸ“stability Stability
8 πŸ“summary Summarising the results into funky heatmaps
9 πŸ“guidelines Guidelines
10 πŸ“benchmark_interpretation Benchmark interpretation
11 πŸ“example_predictions Example predictions
12 πŸ“manuscript Preparing the manuscript
πŸ“varia Varia scripts
You can’t perform that action at this time.