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1-submit_jobs.R
2-retrieve_results.R
3-diagnostic_figures.R
3a-overall_comparison.R
3b-time_mem_predictions.R
3c-normalisation.R
3d-compare_sources.R
README.Rmd
README.md
inspect_identity_timings.R

README.md

Benchmarking of TI methods on real and synthetic data

# script/folder description
1 πŸ“„submit_jobs.R Submit the jobs to the gridengine cluster
2 πŸ“„retrieve_results.R Retrieve the results from the gridengine cluster and aggregate the data
3 πŸ“„diagnostic_figures.R Create some diagnostic figures to get an overview of the results
3a πŸ“„overall_comparison.R Overall comparison
3b πŸ“„time_mem_predictions.R Comparison between predicted versus actual running time and memory usage
3c πŸ“„normalisation.R Compare the effect of normalisation on the results
3d πŸ“„compare_sources.R Compare the different dataset sources
πŸ“„inspect_identity_timings.R Check different benchmark component timings

The results of this experiment are available here.

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