Metrics to compare two trajectories
This R package implements several metrics for comparing two single-cell trajectories.
- Specific metrics, metrics which look at the similarity of a specific part of the trajectory, such as the topology or the cellular ordering
|cordist||Geodesic distance correlation||cell positions|
|MSErf||Random Forest MSE||neighbourhood|
|NMSErf||Random Forest Normalised MSE||neighbourhood|
|R2rf||Random Forest R²||neighbourhood|
|NMSElm||Linear regression Normalised MSE||neighbourhood|
|MSElm||Linear regression MSE||neighbourhood|
|R2lm||Linear regression R²||neighbourhood|
|F1branches||Overlap between the branches||branch assignment|
|F1milestones||Overlap between the milestones||branch assignment|
- Application metrics, which assess the accuracy of some downstream analyses of trajectories
|corfeatures||Feature importance correlation|
|wcorfeatures||Feature importance weighted correlation|
|ksfeature||Feature importance enrichment ks|
|wilcoxfeature||Feature importance enrichment wilcox|
- Overall metrics, which combine several specific and/or application metrics to analyse the overall similarity of two trajectories
news(package = "dyneval") or NEWS.md for a
full list of
Recent changes in dyneval 0.9.9 (07-04-2019)
MINOR CHANGE: Update categories of metrics
MINOR CHANGE: Move metric functions from dyneval to dynutils.
MINOR CHANGE: Bump version number for dynwrap 1.0.0
Recent changes in dyneval 0.2.2 (21-11-2018)
DOCUMENTATION: Update and expand documentation.
BUG FIX: Update dyneval for dynwrap 0.3.1 (#50).
MINOR CHANGE: Clean up imports and suggests.