dyngen in a Docker container

dynverse/dyngen contains all necessary packages to run dyngen from start to finish.

Running the container

To run the container, you can use the following command.

docker run --rm -p 127.0.0.1:8787:8787 -e DISABLE_AUTH=true -v `pwd`:/home/rstudio/workdir dynverse/dyngen

Keep this window open, and open up a browser and go to 127.0.0.1:8787. Open up the file getting_started.R for a small example on how to run a dyngen simulation.

The command can be dissected as follows.

docker run \

  # remove container after use
  --rm \
  
  # specify which port rstudio server uses
  -p 127.0.0.1:8787:8787 \
  
  # disable authentication because I'm lazy
  -e DISABLE_AUTH=true \
  
  # mount the current working directory to the rstudio home folder
  # so you will see it right away when rstudio starts
  -v `pwd`:/home/rstudio/ \
  
  # specify which container to run
  dynverse/dyngen

Update the container

If a newer version of the container has been released, you can update it by running the following command.

docker pull dynverse/dyngen

Building the container

To rebuild this docker container from scratch, run the following command.

docker build -t dynverse/dyngen --build-arg GITHUB_PAT=$GITHUB_PAT .

GITHUB_PAT should be an environment variable corresponding to the Personal Access Token created by following this tutorial.