Skip to content
Visualising single-cell trajectories, including comparisons between two models 📈
R
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
.readme_files add alpha and size parameters to plotting functions Jul 4, 2019
R
data-raw add root to example datasets May 8, 2019
data add root to example datasets May 8, 2019
inst
man
tests remove dyntoy dependency Mar 21, 2019
vignettes refactor as in dynverse/dynwrap#122 Mar 25, 2019
.Rbuildignore update readme Mar 21, 2019
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
README.Rmd update arguments to dynwrap v1 Mar 28, 2019
README.md
_pkgdown.yml
dynplot.Rproj

README.md

ℹ️ Tutorials     ℹ️ Reference documentation

Common visualisation tools for single-cell trajectories

Installation

devtools::install_github("dynverse/dynplot")

On linux, udunits2 has to be installed:

  • Debian / Ubuntu / Linux mint: sudo apt-get install libudunits2-dev
  • Fedora / CentOS: sudo dnf install udunits2-devel

Usage

The package provides different ways to plot both the topology and cellular properties of a trajectory:

And to plot the expression and feature importances of many genes along the trajectory

Latest changes

Check out news(package = "dynwrap") or NEWS.md for a full list of changes.

Recent changes in dynplot 1.0.2 (04-07-2019)

  • BUG FIX: Fix weird ceiling warning.

  • BUG FIX: Fix for new select waypoints

  • MINOR CHANGE: Added parameters size_cells, alpha_cells and border_radius_percentage to plotting functions that plot cells.

Recent changes in dynplot 1.0.1 (07-05-2019)

  • BUG FIX: Remove dependency on shades, fixing rgb2hsv bug

Dynverse dependencies

You can’t perform that action at this time.