Skip to content

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

License

dzerbino/velvet

master
Switch branches/tags

Name already in use

A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?
Code

Files

Permalink
Failed to load latest commit information.
README.TXT

VELVET SOURCE 
March 28 2008
Daniel Zerbino

NOTE: The PDF manual in this directory contains all the information contained
in this text file, plus much more!

> SUMMARY
	* A/ REQUIREMENTS
	* B/ COMPILING INSTRUCTIONS
	* C/ WHERE IS THE MANUAL?

----------------------------------------------------------------------------------
A/ REQUIREMENTS

	Velvet should function on any standard 64bit Linux environment with
gcc. A good amount of physical memory (12GB to start with, more is no luxury)
is recommended. 

----------------------------------------------------------------------------------
B/ COMPILING INSTRUCTIONS

Normally, with a GNU environment, just type:

> make

For colorspace Velvet replace that command with 

> make color

Otherwise compile each *.c file separately, then execute the default
instructions at the top of Makefile. 

----------------------------------------------------------------------------------
C/ WHERE IS THE MANUAL?

If you cannot find the PDF manual in the source directory (probably because
you downloaded Velvet through git), you can simply compile it:

> make doc

About

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

Resources

License

Stars

Watchers

Forks

Packages

No packages published