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@eQTLGen

eQTLGen

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  1. eQTLGenColocalisationPipeline eQTLGenColocalisationPipeline Public

    R 2

  2. ConvertVcf2Hdf5 ConvertVcf2Hdf5 Public

    eQTLGen phase II ipeline for converting imputed .vcf files into .hdf5 format.

    Python 1 1

  3. eQTLGenEqtlGwasColoc eQTLGenEqtlGwasColoc Public

    Pipeline for running colocalisation analysis between eQTLGen genome-wide eQTL and UKBB GWAS summary statistics

    R 1

  4. eQTLGenEqtlGwasLdsc eQTLGenEqtlGwasLdsc Public

    Nextflow 1

  5. DataQC DataQC Public

    eQTL data QC pipeline for eQTLGen phase II project.

    R 2

  6. eQTLGenImpute eQTLGenImpute Public

    Genotype imputation pipeline for eQTLGen phase II project. Uses 1000G p3 30X WGS panel as a reference.

    Nextflow 3

Repositories

Showing 10 of 17 repositories
  • MetaAnalysis Public

    Pipeline for running HASE encoded meta-analysis

    eQTLGen/MetaAnalysis’s past year of commit activity
    Python 0 1 1 0 Updated Dec 10, 2024
  • eQTLGenEqtlGwasLdsc Public
    eQTLGen/eQTLGenEqtlGwasLdsc’s past year of commit activity
    Nextflow 1 0 0 0 Updated Dec 5, 2024
  • eQTLGenEqtlGwasColoc Public

    Pipeline for running colocalisation analysis between eQTLGen genome-wide eQTL and UKBB GWAS summary statistics

    eQTLGen/eQTLGenEqtlGwasColoc’s past year of commit activity
    R 1 0 0 0 Updated Oct 24, 2024
  • eqtl-pqtl-comparison Public

    Pipeline for doing comparisons between pQTL and eQTL datasets

    eQTLGen/eqtl-pqtl-comparison’s past year of commit activity
    R 0 0 0 0 Updated Oct 21, 2024
  • HubSnpEnrichment Public

    Pipeline for running enrichment analysis for every pleiotropic "hub" eQTL variant.

    eQTLGen/HubSnpEnrichment’s past year of commit activity
    R 0 0 0 0 Updated Oct 20, 2024
  • CisTransColoc Public

    Pipeline for running cis-eQTL vs trans-eQTL colocalisation analysis

    eQTLGen/CisTransColoc’s past year of commit activity
    R 0 0 2 0 Updated Oct 15, 2024
  • EstimateHeritability Public

    Pipeline for applying LDSC for every eQTL gene

    eQTLGen/EstimateHeritability’s past year of commit activity
    R 0 0 0 0 Updated Oct 7, 2024
  • eQTLGenInteractions Public

    Pipeline to map snp * covariate eQTL effects for eQTLgen

    eQTLGen/eQTLGenInteractions’s past year of commit activity
    R 0 1 0 0 Updated Aug 7, 2024
  • MakeSingularityContainer Public

    Setup for making Singularity container for eQTLGen phase II analyses

    eQTLGen/MakeSingularityContainer’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Jun 14, 2024
  • eQTLGenImpute Public

    Genotype imputation pipeline for eQTLGen phase II project. Uses 1000G p3 30X WGS panel as a reference.

    eQTLGen/eQTLGenImpute’s past year of commit activity
    Nextflow 0 Apache-2.0 3 0 0 Updated May 8, 2024
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