Contribute muscle #212
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| EasyBuild support for building and installing MUSCLE, implemented as an easyblock | ||
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| @author: Andreas Panteli (CyI), George Tsouloupas (CyI) |
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I fixed a bug in the framework that is triggered by MUSCLE without this dedicated easyblock (see easybuilders/easybuild-framework#660), and also fixed an issue in the Fixing those two bugs removed the needed for a dedicated MUSCLE easyblock, so I removed it in georgets#3. |
make PackedBinary also copy files, remove MUSCLE easyblock
fgeorgatos
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that referenced
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Nov 8, 2013
…block was removed in easybuilders/easybuild-easyblocks#212 + style fixes
sylmarien
referenced
this pull request
in ULHPC/modules
Jun 29, 2015
…d9b4
5a7d9b4 Merge branch 'develop' into uni.lu
737ea25 Merge pull request #617 from boegel/properly_support_custom_easyblocks_repo
3d4726e Merge pull request #630 from boegel/Xmipp_install_sh
2db362a pass down $CFLAGS and $CXXFLAGS
3fd977a Merge pull request #631 from boegel/det_pylibdir
e0d245c add debug log msg
f686761 don't restrict det_pylibdir to only EB-provided Python, there's no reason to
ef5950e don't use $CONFIGURE_ARGS, doesn't work, inject into install script instead; use MPICXX for MPI linker, set $PYTHONPATH via Xmipp module
1eb7457 Merge pull request #627 from boegel/bundle_sanity_check
7c28ff4 remove unused import
ed35ac2 fix Xmipp easyblock, use provided install.sh script (WIP)
47ef77b Merge pull request #628 from boegel/pylibdirs
e0d1267 undo changes to Xmipp easyblock
e895491 don't wrap a list into a list
28e6798 fix typo
aee6697 fix quotes issue
6234f0e escape quotes
83916a0 keep *all* Python lib dirs into account in PythonPackage easyblock
07f9c5b run normal sanity check in Bundle easyblock if exts_list, sanity_check_paths or sanity_check_commands is defined
47f9990 add support in Bundle easyblock to run full sanity check
5f61264 Merge branch 'develop' into uni.lu
ab4c6f3 Merge pull request #622 from wpoely86/clang-san
c8add85 Use != intead of not ==
cb0c8b2 don't disable san test when --strict=error is used
cd473a4 update clang to handle unlimited stack size
bdf5ed2 Merge pull request #494 from hajgato/metis_configopts
9b925f3 Merge pull request #8 from boegel/metis_configopts
3bf6bbe fix double '.' in lib exts
371c859 Merge pull request #7 from boegel/metis_configopts
bccb4ed Merge branch 'develop' into metis_configopts
045e340 Merge pull request #6 from boegel/metis_configopts
d9fd20d move libext check to configure_step
12784dc Merge pull request #476 from hajgato/cuda_update
9949d0a Merge pull request #508 from hajgato/nwchem6.5
901ec9a Merge pull request #5 from boegel/cuda_update
2667ba9 Merge branch 'develop' into cuda_update
2c32a9c style corrected
9448431 Merge pull request #4 from boegel/nwchem6.5
89efb28 Merge branch 'develop' into nwchem6.5
a5d0100 extra parentesis removed
74cef65 space inserted, libmetis extension corrected in sanity test
ec41bf2 make custom easyblocks repo unit test robust against easy-install.pth crap
e114b43 add test (and new test module) for verifying interaction with a custom easyblocks repo
41eef50 tweak easybuild.easyblocks package declaration to better support custom easyblocks repo
1357d4a Merge pull request #615 from boegel/CMakeMake_separate_build_dir
c36453c make out-of-source build with CMake truly out-of-source
537caa8 Merge pull request #565 from rjeschmi/ruby-ext-gem
9811067 Merge pull request #2 from boegel/ruby-ext-gem
9d8e066 add custom sanity check in Ruby easyblock
4064e69 fix faulty super call
51719b7 avoid extra method, just use install_step
6240e5f Merge branch 'ruby-ext-gem' of https://github.com/rjeschmi/easybuild-easyblocks into ruby-ext-gem
5f18b53 adding configopts
737e9ec Merge branch 'develop' into uni.lu
6a9815c Merge branch 'v2.1.x' into develop
22d9a96 Merge pull request #613 from boegel/v2.1.x
4d2e6ea bump version to 2.1.1 and update release notes
98b4cd9 Merge pull request #513 from wpoely86/gromacs
f35e61a add comments explaining why we need to figure out the lib subdir
b340ab9 fix definition of self.lib_subdir in GROMACS install_step
46551fd loosen up check used to determine lib subdir
9ebc252 fix libname in lib detection performed after installation
aa0767c detect library subdirectory in GROMACS easyblock
2ed932f GROMACS easyblock updated for version 5
aebeb0a Merge pull request #513 from wpoely86/gromacs
b4dc00a Merge pull request #12 from boegel/gromacs
7ba5b9c add comments explaining why we need to figure out the lib subdir
fee4352 fix definition of self.lib_subdir in GROMACS install_step
1345838 Merge pull request #11 from boegel/gromacs
d6a8c09 loosen up check used to determine lib subdir
c2107f3 Merge pull request #10 from boegel/gromacs
01d618d fix libname in lib detection performed after installation
6d58af2 Merge pull request #9 from boegel/gromacs
b96a210 detect library subdirectory in GROMACS easyblock
ef06622 Merge branch 'develop' into gromacs
001e5f2 Merge pull request #610 from boegel/fix_module_only
c897c11 just change to 'src' subdir, if it's there in EB_Primer3.guess_start_dir
8e406df only use 'srcdir' if it exists
ae40ea7 add missing super call to guess_start_dir in Primer3 easyblock
41ba7f3 correct detection of unset pylibdir
0eac4d5 add new test module to verify compatibility of easyblocks with --module-only
f113100 fix compatibility of easyblocks with --module-only
1cedaa0 Merge pull request #606 from akesandgren/develop
5216b45 Merge pull request #610 from boegel/fix_module_only
4a260c4 just change to 'src' subdir, if it's there in EB_Primer3.guess_start_dir
22d9100 only use 'srcdir' if it exists
ddf6973 add missing super call to guess_start_dir in Primer3 easyblock
d061a40 correct detection of unset pylibdir
8c7dc20 add new test module to verify compatibility of easyblocks with --module-only
c9ad02b fix compatibility of easyblocks with --module-only
82e8f99 No need to check for compiler if the interfaces are not going to be built.
a78e0d1 Merge pull request #606 from akesandgren/develop
94c1149 No need to check for compiler if the interfaces are not going to be built.
92173af Merge branch 'develop' into uni.lu
32fe9d2 bump version to v2.2.0dev
a4bca85 Merge branch 'v2.1.x' into develop
f7f4bd0 Merge pull request #604 from hpcugent/develop
f6a5cdd bump version to v2.1.1dev
4f21d0a Merge pull request #601 from boegel/eb210
d9f4f4a Merge pull request #552 from geimer/scorep_update_for_subtoolchains
3ef3a82 Merge pull request #603 from geimer/gcc_fix_for_module-only
ea5087f include PRs #552 and #603 in release notes
fe3af67 Initialize self.platform_lib with a reasonable default value to make '--module-only' work
85a20a6 also include #576
888952b minor enhancement to v2.1.0 release notes
123c9a6 fix date in releas notes
15378a5 include PR #602 in release notes
96e5199 Use 'EasyBuildError' rather than 'self.log.error'
36903f7 Merge branch 'develop' into scorep_update_for_subtoolchains
60d8288 Merge pull request #602 from boegel/r320
ce098f6 vfonts.so disappeared in R v3.2.0
e7efad0 Merge pull request #600 from boegel/fix_ebmeta
02c3356 Merge pull request #577 from boegel/pythonnousersite
869b05a fix copyright line in setup.py
634f1fd bump version to 2.1.0 and update release notes
716e5cb fix remarks
09a201e Merge pull request #1 from boegel/ruby-ext-gem
319e245 vsc-base sources are optional, use self.initial_environ rather than self.orig_environ
58e9905 fix style issues, add missing imports
fad88ef removing the essentially empty constructor
5e346b0 some cleanup per review from @boegel
5151b31 Merge pull request #596 from boegel/cp2k_tweaks
4ac9382 fix remarks
4c510c3 Merge pull request #598 from wpoely86/gcc
d9bcd7c Fix remark
3679dba fix logic w.r.t. MKL vs FFTW
ae91f35 Fix error
74aebd1 Update GCC easyblock for GCC 5
8884952 Merge pull request #597 from boegel/python_buildopts_exts
42eeac8 unset buildopts/installopts before installing Python extensions
49b9fd3 be robust against $LIBS not being defined in CP2K easyblock
1716c09 tweak CP2K easyblock w.r.t. LAPACK/FFTW support
fbb4a5f Merge pull request #595 from boegel/cray
93cfd20 minor fix in HPL easyblock w.r.t. checking defined env vars
8d0d19b Merge pull request #593 from boegel/slepc35
f5d4b3d update SLEPc easyblock for v3.5 + style cleanup
e1b2aa0 Added FastQC easyblock.
b5b1ed3 Merge pull request #590 from boegel/no_more_root
06a5bf3 Merge pull request #591 from boegel/PYTHONPATH_before_test_install
5ce2742 also set $PYTHONPATH before installing Python pkgs in tmp dir in test_step
3124163 Merge pull request #486 from boegel/wien2k
ccf9981 fix extra_options in WIEN2k easyblock
76d9c66 Merge branch 'develop' into wien2k
0a823ad fix broken module_generator statement in WPS easyblock
c8121c3 fix broken module_generator statement in WRF easyblock
36be3fc remove unset self.mpipath in OpenFOAM easyblock
19c4486 fix remark
07a6646 don't supply absolute paths to prepend_paths unless we really need to
7a05cbd get rid of hardcoded setenv and prepend-path Tcl code in easyblocks
6ed30bc get rid of remaining instances of $root
e047f83 Merge branch 'fix_mklroot' into no_more_root
358e177 stop using $root
644fd4a stop using $root to make easyblock compatible with module files in Lua syntax
33f4252 Merge pull request #588 from boegel/log_error_to_raise_EasyBuildError
542bd68 fix mistakes spotted by @rjeschmi
a072c5a test use of log error/exception methods
028d172 replace 'log.error' with 'raise EasyBuildError'
8b14c73 Merge pull request #540 from boegel/configuremakepythonpackage
9d47943 Merge pull request #586 from pescobar/rosetta-fix
6461f60 remarks fixed
1a6c18a removed demos folder
99ef7b8 added extra folders to extract
0d6234e Merge pull request #585 from ocaisa/patch-3
f937001 Add prebuildopts to build_step
2488c99 Merge pull request #584 from ocaisa/patch-3
a97c1c3 Add libmpichf90 to the libmpi variables
eb988ed Merge pull request #581 from JensTimmerman/xmipp
5f23db2 Merge pull request #10 from boegel/xmipp
891c28a fix Xmipp sanity check paths (bin subdir)
750af72 fix mpi_bindir for impi in Xmipp easyblock
954692f fix style issues
0681509 Merge branch 'develop' into configuremakepythonpackage
acad286 Merge pull request #582 from boegel/FLUENT_tweaks
a4d540e correct version for -noroot, enable -debug and honor installopts
0a91c13 fixed wrong remarks
08924c2 self.python_root now
e0faaa7 use os.path.join more
e005925 less .format more %
50a935f use self.installdir instead of cfg.install_dir
15ff261 don't use preconfigopts twice
0bc92d8 forgot ,
19a9b96 fixed string interpolation
3247662 got rid of some strings
bc8d537 fixed join with a list
ac0989d workaround for https://github.com/hpcugent/easybuild-framework/pull/1229
d5e703f fixed further remarks
24f4d14 Merge pull request #580 from ehiggs/hadoop-parallel
9312bbe fixed some typo's
090507b use install_dir instead of
82db224 further fixes
4e9ae35 also unpack scons
e39bf15 dont' forget to assign cmd
263d9d5 moved stuff out extract step, we don't know start_dir yet in this step
1b28c8d fixed remarks
1a5190f Don't make a new parallel flag that shadows the existing one.
c09351a removed todo's
e5916b7 added xmip easyblock
e278857 Add the ability to make parallel builds.
3736cf2 only use -noroot for older versions of FLUENT
0fd745d Merge pull request #579 from ocaisa/patch-1
db51f2a Merge pull request #1 from boegel/patch-1
f9ba601 fix long lines
eb9753f Fixes after compression
2883cee IntelMPI should be INTELMPI...
c46c6e8 Typo
e50d33d Compressed a little
1e09a1d Intel MPI family is IntelMPI
3cf1d15 Make runtest configurable
d25b98d Improve logging
c54d8ac Incorporated use of toolchain.MPI_FAMILY
7c7d304 Merge pull request #578 from boegel/tinker
f37ed8a Allow support for MPICH/MPICH2
b9cce20 add easyblock for building and installing TINKER
e2015b1 define $PYTHONNOUSERSITE in PythonPackage easyblock
4aea44e fix definition of $MKLROOT, should be set to 'mkl' subdir of install dir
d0edeb4 bump version to v2.1.0dev
8bd3a34 Merge pull request #574 from hpcugent/develop
efcc798 Merge pull request #572 from boegel/eb20
5cbd967 Merge branch 'master' into eb20
9b1638d Merge pull request #573 from boegel/fix_eb20_update_path
fd36909 update release notes
2ea321c bump version to v1.16.2
c6aa295 fix easyblock for EasyBuild to support upgrade path to EasyBuild v2.0
17b1654 bump to v2.0.0 + update release notes
185c4ed Merge pull request #570 from wpoely86/clang36
d33d566 Fix indenting
82f7b45 Fix remarks
4122a06 Merge branch 'develop' into clang36
b32eb40 Patch out sanitizer when vmem limit is set with Clang 3.6
0433ce4 Merge pull request #558 from boegel/one_gamess_us_to_rule_them_all
152deb7 Merge pull request #545 from wpoely86/psi
86c9063 don't try to change obtained tmpdir for tests, just complain (early)
1939aee avoid '['/']' characters in $TMPDIR used for GAMESS-US, define $I_MPI_HYDRA_BOOTSTRAP to 'fork' to avoid use of SSH
51d09c7 Merge branch 'develop' into one_gamess_us_to_rule_them_all
71d7c2f define $TMPDIR and $I_MPI_FALLBACK when running GAMESS-US tests using rungms
3aa6916 Merge pull request #568 from boegel/copyright2015
c281024 update copyright line in headers to 2015
f304630 copyright fix
47a073e Merge pull request #567 from boegel/fix_ebmeta20
1ded62d limit actions to local only
e10edf4 fix remarks
0718598 also install vsc-base package for EasyBuild v2.0 and up
d40d7be try and make sure easy-install.pth entries are correct when installing EasyBuild, and check on it
22a32d0 Merge pull request #566 from hajgato/root
5c7d99e Take 'preconfigopts' into account
f7435d6 adding ignore-dependencies to limit side effects of gem install runs
f136213 clean up comment and docstrings noted by @boegel
b00578e Preliminary versions of an easyblock for ruby and its gems
c67092a Use dedicated directory for tests
73c6394 Set tmp location for PSI4 tests
c09dc42 correct MPI lib spec in GAMESS-US easyblock
bd190c8 Merge pull request #562 from rjeschmi/samtools-1.2
10dd928 Merge branch 'develop' into one_gamess_us_to_rule_them_all
1320614 fixes for goolf-based builds of GAMESS-US
c35b4b3 fix typo in log message
c80d309 Restore original sanity check
57dde2d Enhanced sanity check PSI
b6b497d Fix backwards compatibility for PSI
46b3727 Further enhanced PSI easyblock
58be784 Merge branch 'develop' into psi
eec91a3 Merge pull request #563 from boegel/Hadoop
8451407 use log.error instead of log.exception
3838ff9 don't define $HADOOP_CONF_DIR
20bf1a1 don't reimplement Tarball.install_step, but enhance/use it
d7ce912 copy from start_dir rather than builddir
cca302d add easyblock for Hadoop that supports building native libs
35bb44a new samtools easyblock for 1.2
1ac5893 Merge pull request #559 from boegel/eb_fixes
80e93a0 minor fixes in EasyBuildMeta easyblock w.r.t. supporting bootstrapping using provided tarballs
f745848 Add Qt dependency handling
9decb56 fix escaping of ?
164635a make Q&A less strict to make it work with older GAMESS-US versions
e4a2bbf run tests one-by-one and verify correctness using provided script; also patch in definiing ERICFMT and MCPPATH in rungms
8fce4cb add cleaned up/enhanced easyblock for GAMESS-US
125303a Merge remote-tracking branch 'github_scintimandrion/GAMESS-US' into one_gamess_us_to_rule_them_all
a9f2134 Merge remote-tracking branch 'github_pescobar/gamess' into one_gamess_us_to_rule_them_all
41d785e Merge pull request #557 from boegel/depr_gatk
0aaba71 deprecate GenomeAnalysisTK easyblock, since it's basically equivalent to Tarball
b444845 Merge pull request #522 from pescobar/picard-sanity-check-fix
ad95fd4 Merge branch 'develop' of https://github.com/hpcugent/easybuild-easyblocks into picard-sanity-check-fix
614eda5 Make Score-P easyblock usable for subtoolchains w/o MPI
1dbe40b Merge pull request #551 from boegel/RPackage_enhanced
e08d7cc Merge branch 'RPackage_enhanced' of github.com:boegel/easybuild-easyblocks into RPackage_enhanced
5acbee8 Merge branch 'develop' into RPackage_enhanced
89a4d8a Merge pull request #550 from boegel/bundle
3605c3e Merge pull request #1 from rjeschmi/rpkg-home-fix
bca0c15 Just adding quotes around the prefix path
153e66e strip off newline from output of 'R RHOME'
bfef61a enhance generic RPackage easyblock to support installing extensions in a separate prefix
096bc50 test loading of generated module in generic Bundle easyblock
beccfbe add new generic easyblock for installing a bundle of modules
d6900a2 Merge pull request #547 from wpoely86/nosupport
acce07b Fix remark in perl
ac2b457 Fix remarks in intelbase
ff55a27 Merge pull request #546 from wpoely86/cmake
cdf16f5 Merge pull request #534 from JensTimmerman/develop
d1337b9 Let class do __init__ and the give error
f3c668f Fix bug
07fe6d2 Drop various deprecated for EB 2.0
6486398 versionindependendpythonpackage is unsupported now
494003b Drop deprecated stuff in intelbase
a32fd68 Make CMakeMake ready for EB 2.0
334cf1f In the generic CMake class: always be verbose
93c2617 PSI: rework for future version
2a01219 It's necessary to patch the rungms script after, not before, configuration.
3c102cf fix parent call in sanity_check_step in CMakePythonPackage and ConfigureMakePythonPackage
0e46f23 include custom definitions of extra_options and test_step in ConfigureMakePythonPackage generic easyblock
6115ddd Merge branch 'develop' into configuremakepythonpackage
a692ad8 Custom test and setting build version number
46794a1 Updated extract command
c0cf9a1 Merge pull request #543 from boegel/fix_unit_tests
6e3300e fix iterating of extra_options in unit tests
554dc42 stop checking for old extra_options return type (list), now only dict
103fef2 Renamed gamess-us.py to gamessus.py, etc.
32e54e0 Merge pull request #541 from hpcleuven/fix/suitesparse
d47108f Merge branch 'develop' into GAMESS-US
93c7ced Changes to GAMESS-US easyblock
4556262 Merge pull request #502 from boegel/binary_staged_install
aebbbab fix remarks
028e111 Merge branch 'develop' into binary_staged_install
3844f03 Modified comment as per request
d2fbc74 Addressed issues raised in PR comments
bcb78b6 Fixed for new config file format
0097634 style and deprecation fixes in ConfigureMakePythonPackage generic easyblock
5986380 Merge pull request #538 from boegel/FDTD_relocate_rpm
8d2f9bf fix remarks
64f0702 fix expected location of original FDTD RPM
ff7fb6a rebuild FDTD RPM to make it relocatable
5b194ab refactor generic Rpm easyblock to make rebuild_rpm function available to other easyblocks
3c7abe4 Updates to GAMESS-US easyblock
7584481 Initial commit of GAMESS-US EasyBlock, which is very much in progress
f9b09c3 Merge pull request #535 from geimer/gcc_lto_cleanup
71d4c1b Merge pull request #536 from boegel/EB_Libint
386ee92 Merge pull request #537 from boegel/cp2k_fes
384e136 remove fes from CP2K sanity check
732172e fix remarks
76594ab revamp EB_libint2 easyblock into EB_Libint that works for both Libint v1.x and v2.x
942f4ac Use `withlto` easyconfig parameter to trigger LTO sanity check
e946028 made not being able to remove a dir (probably because it does not exist) non fatal
f1291e2 Merge branch 'develop' of github.com:hpcugent/easybuild-easyblocks into develop
20dcc4a Adding a block for packages that use 'python configure'
be6d0ab Merge pull request #532 from boegel/v1.16.x
6d16498 Merge branch 'v1.16.x' into develop
5ffc37f bump to v1.16.1 + update release notes
f60ea71 Merge pull request #531 from boegel/eb_sanity_check
9b91f2c fix EasyBuild versions for which DEPRECATED=1.0 is set in EasyBuild sanity check
85641ea bump version to 2.0.0dev
d6226f9 bump version to 1.16.1dev
0dfed6c Merge pull request #530 from hpcugent/develop
e811841 fix version to v1.16.0
984447a bump version to 2.0.0dev
9e8bc07 bump version to 1.16.1dev
3445a1a Merge pull request #529 from boegel/eb1160
10944d6 bump version to 1.16.0 and update release notes
b2886e9 improved sanity check
f565cb1 Merge pull request #528 from boegel/extra_options_cleanup
7ef78df Merge pull request #518 from boegel/GATE
51e59c5 Merge pull request #517 from boegel/geant4_94
1a20059 cleanup in extra_options methods, no need to cast to dict or return via extra_options of parent
fbadad6 Merge pull request #527 from boegel/depr_license
0dd7534 fix version check in GATE easyblock
a4825bf fix custom $CPATH setting in ROOT easyblock
2140c83 also add include/root to $CPATH in ROOT easyblock
208b30c Merge branch 'develop' into GATE
cd13e45 fix remarks
4bf1dcf mark 'license' custom easyconfig parameter as deprecated in IntelBase
590e135 Merge pull request #525 from pescobar/modeller-pythonpath-extend
efe6292 move sanity check inside install function
74ee9cc change to a clear message when key is not definedwq
5183cad added sanity check for the key
c88c52d Merge pull request #523 from boegel/fix_deprecated
dc1f9bb fix use of __import__
64917d0 Merge branch 'develop' into fix_deprecated
a796ba5 Merge pull request #526 from boegel/abaqus_noqa
dc4b5cf noqa for ALADIN configure cmd
d37e766 make sure we don't trip over deprecated behaviour in EasyBuild sanity check
6e1306c added $root/modlib to PYTHONPATH guesses
02925b0 Merge branch 'develop' into fix_deprecated
7022026 Merge pull request #524 from pescobar/Chimera
4648ec9 fixed typo
e687481 do cd using python
68125c0 changed depecrated imports
e1bdde6 added missing docstrings
569b9b6 chimera easyblock
a0b0fb6 avoid use of deprecated VersionIndependendPythonPackage easyblock
c5ce163 bump version for which using hardcoded BLAS/LAPACK libs in LAPACK/ScaLAPACK easyblocks is deprecated
a8ba8a1 enhance unit tests: check extra_options return value both on list-of-tuples and dict approach
e1fa7fe fix making files_to_copy non-mandatory in NAMD easyblock
3c77f71 fix typo
3f9784b directly check whether 'license' is set via self.cfg._config in generic IntelBase easyblock
f912833 fixes in extra_options of NAMD and CPLEX easyblocks
a053320 fix extra_options return value
ab74ff7 remove useless deprecation message in VSCPythonPackage easyblock
8c772da only issue deprecation warning if 'license' easyconfig parameter is actually defined
8f94717 fix use of deprecated functionality, enhance unit tests to check for it
70db64b Merge pull request #519 from geimer/fix_mpich_inconsistencies
b21f625 Fix typo
381b75d use 'mpich2' value for ESMF_COMM with MPICH family (i.e., MPICH v3.x)
35f66a3 Merge pull request #521 from fgeorgatos/bugfix_headers_fotis_cern_ch
36b96e0 fix use of mpi_family() in ALADIN, Intel MKL and NWChem easyblocks, w.r.t. MPICH family
d98a4cb latest picard-1.119 doesn't include sam-119.jar. Fixed sanity check
3006527 Merge branch 'develop' of github.com:hpcugent/easybuild-easyblocks into bugfix_headers_fotis_cern_ch
b9fcdf8 fix easyblock headers
c49f5fe Uni.Lu/LCSB, NTUA
fec321d 2012-2014
bcdd0cb fotis@cern.ch
91b2cff Fix handling of MPICH 3.x for Scalasca 1.4.3
8d99c8d Merge pull request #520 from boegel/openfoam_qa
eb6110c minor extra noqanda entry for OpenFOAM-Extend
dfe4725 Treat mpi_family MPICH as MPICH 3.x instead of MPICH 1.x
413841d add ported easyblock for GATE, which supports building and installing GATE v6.1, v6.2, v7.0
6f23d5f Merge pull request #488 from boegel/openfoam_qa
4a6a329 symlink env scripts for Geant4 v9.4
81a2b60 fix make_module_extra for Gean v9.4
673c9d3 also fix version check in install_step
48af732 fix version check + sanity check in Geant4 easyblock + style fixes
3f70b2b Merge pull request #516 from boegel/doc_refs
366d2b1 fix links to docs
1372c17 Merge branch 'master' into develop
aa8f62c GROMACS easyblock updated for version 5
29ccd63 Merge pull request #512 from rjeschmi/samtools-1.1
c98a119 missing comma caused older versions to break
32a5e7d missed a few files
dbf1570 an updated samtools easyblock for some changed to the build environment
8e5b0e8 Merge pull request #509 from boegel/CP2K_type_check
1d29bcc fix minor remark
b227b19 add type check in CP2K easyblock
ac65b72 Add EOMIP and EOMEA in NWChem6.5
c483704 Merge pull request #506 from boegel/module_generator
5acd0d6 Merge pull request #501 from boegel/grmoacs_sanity_check_lib64
6002a62 Merge pull request #504 from boegel/abaqus_sanity_check_cmd
9911484 rename self.moduleGenerator to self.module_generator
cfa5b0d Merge pull request #505 from boegel/README_docs
8104f71 drop title in README
1276196 moar cosmetic changes
d8b90d0 cosmetic changes
96261dc fix image indent for build statuses
ab0b322 update/cleanup README
2fe0c95 Merge pull request #503 from boegel/binary_installopts
493a070 take (pre)installopts into account in Binary easyblock
8f11fd3 add sanity check command for ABAQUS
d7f3e7f make sure that final install directory exists before trying to remove it
3985584 move support for staged_install from CPLEX easyblock to generic Binary easyblock
acb04ff Merge pull request #493 from ocaisa/change_impi_default_compiler
c5448da Merge pull request #4 from boegel/change_impi_default_compiler
e28c736 last cleanup
6443055 use os.path.join
b4b934b Merge pull request #500 from boegel/fix_files_to_copy_default
7883102 consider both 'lib' and 'lib64' in sanity check for GROMACS
3ac9451 fix default value for files_to_copy in MakeCp easyblock
749536c Update impi.py
4a89b6a Merge pull request #3 from boegel/change_impi_default_compiler
c8cb435 minor style fixes
b74a08e Update impi.py
29ec27f Update impi.py
be85e98 Merge pull request #495 from pescobar/R_ld_library_path
88489d3 style fix
66b24f0 added also "lib" to guesses
cc41b48 Update mpiicc etc. for consistency
3e85175 extra paths for LD_LIBRARY_PATH, LIBRARY_PATH and PKG_CONFIG_PATH
ad58a85 Merge pull request #2 from boegel/change_impi_default_compiler
685ee12 METIS easyblock taking into account configopts
0c4ce78 check compiler env vars before using them
00fb566 Merge pull request #1 from boegel/change_impi_default_compiler
45ac51a fix typos
3e802b8 Update impi.py
ca15236 Update impi.py
6d8bfd7 Update impi.py
4af8236 Update impi.py
02f125d Update impi.py
f88c207 Update impi.py
db3dba6 Update impi.py
1edbe5e Added a switch so that one can override the defaults of the impi installation. Defaults are to wrap the system compilers with mpicc, mpicxx, mpif90, ... The switch overrides this behaviour by setting some environment varaibles. These environment varaibles also affect the behaviour of mpigcc and mpigxx so I've added aliases to give back the expected behaviour that they wrap the GNU compilers.
bd07a86 Merge pull request #485 from boegel/numpy_gimkl
5469a37 fix remark
3701d24 Merge branch 'develop' into openfoam_qa
f57a98c Merge pull request #487 from boegel/intel_move_after_install
15ec200 enable allow_abs where necessary
c057b9e fix guesses issue
13b77bd remove hardcoding of Tcl code in make_module_extra in Intel easyblocks, loosen up itac sanity check
06a6186 factor out 'move after install' code from impi easyblock to IntelBase, and also use it for itac
54ce0e2 Merge pull request #446 from hajgato/petsc_conifg_opts_changed
8a2fc49 Merge pull request #3 from boegel/petsc_conifg_opts_changed
5ed16e3 Merge branch 'develop' into wien2k
504a7fc create non-existent parallel_options file rather than patching it
1525f06 use proper default for taskset parameter in WIEN2k easyblock
f72ef1b patch parallel_options file rather than hard rewriting it
95e2897 fix remarks & cleanup code in PETSc easyblock
225ca17 Merge branch 'v1.15.x' into develop
7160502 taskset takes string values
1222011 fix typo
2b08aae clean up WIEN2k easyblock
99fac2a SCRATCH support for test_cases step + cleanup
9889669 Fixed bug + added temp dir in SCRATCH dir
f196807 Added SCRATCH environment variable to self.cfg
b30a213 Merge branch 'v1.15.x'
70442bb Merge pull request #484 from boegel/v1.15.2
dbb3730 add warning indicator as noqa pattern for OpenFOAM-Extend build command
c03f191 relax -o noqa for OpenFOAM-Extend
3946027 extend noqa list for OpenFOAM-Extend build command
5977f93 correctly specify mkl_libs when building numpy with GCC and imkl
9fb92a5 bump to v1.15.2 and update release notes
0744e58 pass down installopts to CUDA install command
cbcb9c7 Merge pull request #483 from boegel/cuda_installopts
b0f6774 pass down installopts to CUDA install command
6d072a2 Merge branch 'v1.15.x' of github.com:hpcugent/easybuild-easyblocks into v1.15.x
fe2bda8 bump version to v1.15.2dev
e38bb27 add check whether file exists before patching it
955becf Merge pull request #482 from boegel/clang_patching
98fa320 add check whether file exists before patching it
0f00219 fix version check
2dba1a0 only disable sanitizer tests for recent Clang versions
13d9d55 Merge pull request #481 from boegel/clang_patching
108cb74 fix version check
0fbe5ee only disable sanitizer tests for recent Clang versions
a6e32b2 Merge pull request #480 from boegel/fluent_verdir
05ac22a fix remark
cd76b3e only include major/minor version numbers for FLUENT subdir
ae380e2 Merge pull request #478 from boegel/cp2k_libxc
ca5bc21 correct log message mentioned Libxc version being used
488ff9a Extra consistency update
e991fef Consistency update
c367b40 Added wien2k 13/14 support
b05156e Merge branch 'v1.15.x'
687c90c Merge branch 'v1.15.x' into develop
cd17066 fix Libxc version check in CP2K easyblock
38c9d40 Merge pull request #477 from boegel/v1.15.x
0de7b5c bump version to v1.15.1 and update release notes
b8d65ca Versions higher than 6 do not provide 32 bit libraries
2976e77 bump version to v1.16.0dev
38aee82 bump version to v1.15.1dev
b504968 Merge pull request #474 from hpcugent/develop
678c483 Merge pull request #473 from boegel/EBv1.15
af479e7 Merge pull request #436 from besserox/openfoam_cleanup
441751b bump version to v1.15.0 and update release notes
997ac5e Merge branch 'boegel-openfoam_cleanup' into openfoam_cleanup
98ac231 fix sanity check w.r.t. OpenFOAM-Extend differences
cd9e619 Merge pull request #397 from boegel/namd
bf3bf0c Merge pull request #425 from boegel/perl_test
40fb734 Merge pull request #435 from hajgato/easyblocks_for_contrib_R-3.1.0-intel-2014b
5351a51 Update rmpi.py
ef787d1 Update rpackage.py
4ae7f5e correct charm_arch options for building with Intel compilers
cd30180 pin locale for Perl 'make test' to C by setting $LC_ALL
5bd95ae Merge branch 'develop' into perl_test
8d18c55 fix test ok regex
e91ea06 specify compilers and options for NAMD
176a0fe include $CXXFLAGS in Charm++ build command
d857a4d don't specify default value for charm_arch, make it mandatory
43f5cda enhance regex used to check for succesful test run
e396244 fix typo
80b9646 fix test_step for NAMD MPI builds
aa3ae7b Merge branch 'develop' into namd
1a5ef53 Merge pull request #462 from JensTimmerman/trilinos
829d4dd Merge pull request #392 from pescobar/modeller
2f41d77 Merge pull request #2 from boegel/modeller
a7ad0a5 use existing 'key' easyconfig parameter
73c4ab8 Merge pull request #1 from boegel/modeller
33e68a4 avoid hardcoding of (Pythob) lib dirs
9f93ea1 add custom sanity check and guesses for PYTHONPATH and LD_LIBRARY_PATH
596bfab add copyright/license header, use license_key easyconfig parameter
cf855d4 Merge pull request #472 from wpoely86/impi
b770604 impi: use impiver everywhere
119bf6c impi: extend version check to >=
02913e7 obtain default_install_path in just one line
6e6bb78 cosmetic changes
9ce4c8c imports in alphabetical order
d7a0d86 Merge pull request #441 from hajgato/easyblock_nwchem
5b44b0b Merge pull request #471 from boegel/gromacs_5_sanity
f407915 clean up enhanced sanity check for GROMACS, avoid duplicate code
65de108 Merge pull request #453 from hajgato/netcdf_sanity_check_upgrade
6ce34a0 Merge pull request #450 from hajgato/perlmodule_upgrade
57927cc Merge pull request #447 from JensTimmerman/qt
6f25aae mostly working with hardcoded paths
de138f3 ignore error on adjusting permissions (e.g. broken symlinks)
84590af move into install subdir
9f71a73 move all files if they're not in expected directory after unpacking
d89daca make sure that expected subdir is there after extracting
6ff35c6 Merge pull request #466 from boegel/hpl_link
40f48ef include $CFLAGS in linker flags
e8d2813 Merge pull request #465 from boegel/impi5
ae63285 also remove impi dir, v4.1.1 doesn't install symlinks to be removed
ad28b30 fix removing of symlinks
358d593 enhance impi easyblock to handle install subdir crap for impi v5.0.1 too
3c1eb0c libteuchos was refactored in new trilinos versions
d0cbe9e fixed trilinos build
5aefcfc Merge pull request #458 from JackPerdue/ansys_v1507
78d5b90 trim ansysver for updated versions (e.g. 15.0.7) for sanity check dir (v150, not v1507)
921f3af Merge pull request #452 from boegel/mathematica_activation_key
ba76b68 Merge pull request #456 from boegel/fix_contributing_md
5a629bf fix link to code style wiki page in CONTRIBUTING.md
bbe413c don't use raw strings for noqa regexs
8ece3e5 use raw strings for regexes
eac8dcc update sanity test checks for GROMACS 5.x
0628f8b Library locations {lib,lib64} is checked in the sanity check
aa14a89 Merge branch 'develop' of github.com:hpcugent/easybuild-easyblocks into openfoam_cleanup
f79d3fb SCALAPACK_INC_DIR now is set for Intel toolchain
c2f43e0 fix regex for exiting Mathematica
ae67c7d fix regex in QA for Mathematica activation key
e0317b6 add support for specifying an activation key after installing Mathematica
0e9a320 Merge pull request #449 from boegel/r_lib64
b23236b Make perlmodule take into account (pre){config,build,install}opts
43a2654 reverse order of lib/lib64 in R sanity check
06d8fcb Merge branch 'develop' of github.com:hpcugent/easybuild-easyblocks into openfoam_cleanup
0b6e2da remove dead code in R easyblock
b0a1e30 add custom sanity check for R in R easyblock
ef195ef Typos and style corrected
276817e NWChem examples/test fixed
d77a190 Merge pull request #445 from hajgato/imkl_11.1.x_fftw_mpi_wrappers
76220d2 Update rmpi.py
c935594 Merge pull request #2 from boegel/imkl_11.1.x_fftw_mpi_wrappers
333f8b7 fix issue with double underscores in imkl sanity check
776298a fix imkl sanity check wrt 32bit and old imkl versions
78df78a fix renaming of pic libs
c3aa9c6 thoroughly clean up post-install step for imkl to avoid lots of duplicate code
ee03c27 fix sanity check for fftw2 wrapper libs with double/single suffixes
2af7fd6 fix mistakes in FFTW wrapper libs sanity checks
652a236 fix duplicate use of 'ver' in imkl sanity check
a2a05b6 enhance imkl sanity check to include checking for FFTW wrapper libs
423bb11 Merge pull request #1 from boegel/imkl_11.1.x_fftw_mpi_wrappers
5d68c8a create temporary directory for building FFTW wrappers in build dir
cba1f63 fix composing list of build options, explicitely specify compiler=intel if Intel compilers are used
0522c9d add debug info, fix type for elements of allopts, code cleanup
3726c93 fix allopts, should be list of lists rather than a list of strings
7381a0a fix combining PRECISION and interface flags
884dc8f clean up fixes for building Intel FFTW wrappers for imkl v11.1.x or more recent
576778e Update petsc.py
227d2a2 Update petsc.py
c50e4cb Update petsc.py
1ea3a95 new noqa entry for new versions of qt
0b76493 Merge branch 'imkl_11.1.x_fftw_mpi_wrappers' of github.com:hajgato/easybuild-easyblocks into petsc_conifg_opts_changed
eeedb96 Intel fftw mpi update for MKL >= 11.1
c35bd87 PETSc 3.5.1 with intel 2014b
387627d PETSc 3.5.1 with intel 2014b
8dd8e0d Duplicate code was minimzed
e5eb518 Merge branch 'develop' into openfoam_cleanup
3a4d8b8 NWChem Easyblock update for NWChem v6.3
5062d56 NWChem Easyblock update for NWChem v6.3
221becc NWChem easyblock updated for version 6.3
e6b09e1 NWChem easyblock updated for version 6.3
4202ff4 NWChem easyblock updated for version 6.3
067bef8 Merge pull request #440 from hpcugent/develop
764e62f bump version to v1.15.0dev
9881e05 Merge pull request #438 from boegel/EBv1.14
9e487c8 Merge pull request #398 from Bart-CER/ansys
014013b include ANSYS in v1.14 release notes
b9aeac7 fix typo
9f2279e fix N
9f9cbc8 bump version to v1.14.0, update release notes
ac45892 Merge pull request #4 from boegel/ansys
281e6a4 minor style fixes in ANSYS easyblock
09fff1d works like a charm
3cfc086 Merge pull request #437 from boegel/mkl_phi_libs
e34ad83 fix very minor indent issue
ee4a3cc Merge pull request #432 from JackPerdue/impi_5_bin64
c372b1b Merge pull request #434 from boegel/fix_atlas_nopar
10c0398 Add sanity check for OpenFOAM
94c3c56 Update OpenFOAM easyblock
2988a71 Easyblocks for R extenison patching (including extract) and Extesnion Rmpi Intel MPI support (if version >= 0.6-4)
46a4292 fix remark
012d152 correctly disable parallel build for ATLAS
9e4aaae fixing remarks, not working at this stage thought
a360ecf Merge pull request #427 from wpoely86/nomakeopts
71dd4c8 Merge pull request #406 from Bart-CER/abaqus213
8c68db3 Merge branch 'develop' into nomakeopts
bde0dfb Merge pull request #423 from boegel/enhance_blat
8554b76 Merge pull request #426 from wpoely86/idb
bf9a6ee fix remark
b7593ad icc: change point when to drop idb
c2a9231 Merge pull request #408 from boegel/HPCG
7e1db07 Merge pull request #3 from boegel/abaqus213
8dd659e fix remarks
a246275 Merge branch 'develop' into abaqus213
ef70bc8 Merge pull request #433 from boegel/fix_rpm_rebuild
dce4ab5 include --ignorearch when installing rebuilt RPMs
b99a0f2 don't try to enforce x86_64 build arch when rebuilding rpms
0e57dce Intel MPI 5.0.0.028 only provides bin64... fix sanity tests
1dfdb28 add MIC_LD_LIBRARY_PATH for MKL>=11.0
cceaa95 Merge pull request #429 from boegel/imkl_compiler_detection
0c1662a fix poor mans version of toolchain compiler detection in imkl easyblock
ab383e4 One last rename in imkl.py
cb7cbca Replace (pre)makeopts with (pre)buildopts everywhere
b1137cf Use *buildopts instead of *makeopts in configuremake & pythonpackage
5cf1100 Update ansys.py
05d62b2 Update ansys.py
ff04ab6 icc: idb is deprecated
cb98015 Update ansys.py
2f94eda allow a single test to fail too, make the last 's' is 'tests' optional in regex
5993d1f move up debug log message
45fb862 Merge pull request #424 from boegel/mothur_fix
4c8881e fix typo, improve logging
a585eab allow minimum of failed tests for Perl
3d83972 Merge pull request #395 from JensTimmerman/runcmdcp
8fcc70e fix setting of Mothur-specific start dir
f1157ad enhance Mothur easyblock to guess correct start dir for recent versions
4dc5c6d fix typo
88ae4b9 enhance BLAT easyblock by using super's build_step and prebuildopts/buildopts
46fe7d9 Merge pull request #9 from boegel/runcmdcp
6e44050 Merge remote-tracking branch 'github_JensTimmerman/runcmdcp' into runcmdcp
ffe30c3 fix remark, only support list of regex/cmd tuples, rename custom easyconfig parameter to cmds_map
86ad263 Merge branch 'develop' of git://github.com/hpcugent/easybuild-easyblocks into runcmdcp
4996fa1 enhancements in CmdCp and MakeCp generic easyblocks
c917a18 Merge branch 'develop' into runcmdcp
05e2efd make ansys.py listen to self.cfg[license_server]
baffe4c bump version to 1.14.0dev
9c25458 Merge pull request #422 from hpcugent/develop
8cb94c8 Merge pull request #421 from boegel/v1.13.0
025cd5a fix remark
cb27155 add missing entries in v1.13.0 release notes
12a7bac bump version to v1.13.0 and update release notes
9cd8cf9 Update ansys.py
626573f Update abaqus.py
fb15d6b Merge pull request #372 from boegel/cplex_staged
9d5a5ff add comment to fix remark
7f38fe7 Merge pull request #412 from wpoely86/boost
fb360b9 Merge pull request #8 from boegel/boost
d516036 cleanup patching out TIME_UTC, patch in patch step (not configure)
d3debd6 Boost: reworked patching TIME_UTC
9ac1f58 Merge pull request #413 from wpoely86/clang341
56ddc17 Merge pull request #402 from wpoely86/clang-analyzer
4c1de3a Clang: add sanity check
8ef79a9 Merge pull request #407 from boegel/FoldX
b748b89 Clang: reworked install static analyser + sanity check
87ca809 Merge pull request #399 from mesocentrefc/testing
9d6ff92 Clang: better error handling for finding src dirs
15bd792 Merge pull request #420 from boegel/fix_pylibdir_py3
d8f3cdf make print statement used by det_pylibdir Python 3 compatible
c026cf7 Merge pull request #419 from boegel/fix_det_pylibdir
e145761 fix remark
03af3ed fix det_pylibdir, determine Python lib dir via distutils, which works cross-OS
3653487 Merge pull request #409 from pescobar/samtools-fix
4d9655e Merge pull request #396 from wpoely86/gcc49
8d9e859 Merge pull request #417 from boegel/golang-1.2.1
94ecfae add comment on $GOROOT_FINAL
e9407c9 redefine Go easyblock on top of ConfigureMake, copy Go build to installation directory in install_step
ca1a2bf Merge pull request #416 from boegel/openfoam_run_cmd_qa
b29ce25 extra no_qa entry w.r.t. OpenFOAM-Extend
71a0424 Merge pull request #415 from boegel/enhance_makecp
93791d8 fix using 1st unpacked source file as fallback for files_to_copy, make sure there's at least one match per file spec
6f0f88c Merge remote-tracking branch 'github_pescobar/MakeCp-fix' into enhance_makecp
82342b3 Boost: fix find glibc version
cc58f27 GCC: now really fix that line
e574f30 GCC: fix missing in
82fafe9 GCC: don't check for lib64 dir in sanity check
588b789 GCC: added exception for Debian too
ba3252b Clang: more robust directory finding
3583626 Boost: added patch for TIME_UTC
515b55d type fixed
f82bfb0 this shit doesnt work
757eb24 collapsed to one line
3a58d59 switched to adjust_permissions() for permissions fix
7c3543b fix permission for everything, not just "bin"
51058c8 Add license header and docstrings, fix typo
c5ad47f EasyBlock for building Go language compiler
a9afeca fix every binary in samtools to 755 to assure everything is +x
015d20e Merge pull request #253 from boegel/openfoam_mumps
58dced1 GCC: drop tsan, lsan from sanity check
6b24af1 Merge branch 'gcc49' of https://github.com/boegel/easybuild-easyblocks into gcc49
019ddd2 GCC: updated remarks
37c6c52 fix merge conflict
915f818 Merge pull request #400 from boegel/old_gcc
1d6576b fix remark
2793468 fix determining OpenFOAM subdir for OpenFOAM-Extend versions prior to 3.0
64cc16c fix sanity check for OpenFOAM-Extend, use run_cmd_qa for OpenFOAM-Extend configuration
78f10b3 add easyblock for HPCG
ec48b79 update list of potential FoldX binaries
cab8a6f adapting abaqus.py so that it works for version 13.2
7f6150f simplify check for OpenFOAM-Extend
ef73383 correct setting for WM_MPLIB for OpenMPI-based toolchains + add matching comment
43fd885 fix sanity check for OpenFOAM v2.3.0
cc06a0d Merge branch 'master' into develop
36004b3 Merge pull request #404 from hpcugent/v1.12.x
3a66d56 Merge branch 'develop' into openfoam_mumps
e4232b2 all recommended changes to the e-block done
3ccaf1b Update ansys.py
c5e045d Update ansys.py
1da39f8 Merge pull request #403 from boegel/v1.12.x
ec96f93 bump version to v1.12.1, update release notes
13fa099 Clang: add support for static analyzer
a7676c0 Fix silent_cfg_names_map default value
6796997 fix GCC sanity check for versions prior to v4.2
ce73057 disable extra source dirs requirement for GCC versions older than 4.5
271b43a Support recent Intel Ipp and Itac version
bcfecb2 GCC: fix remarks
b390c7d Merge pull request #393 from boegel/configure_cmd_prefix
e692b12 improve debug message, also mention configure_cmd_prefix used
df6062e correcting ansys.py
060228c fix typo
95af29f fix typo
b071133 use 'mpicxx' as Charm++ compiler option with usempi enabled, allow escaping running NAMD test case after building
7de17bd fix another typo
336f40d fix typo
b3098b7 simplify determine compiler part of target archs, fix typo, fix remark
c4872a6 add test run
a5909f5 fix use of namd_arch, use self.namd_arch
a7066e0 fix NAMD compiler spec (drop '-')
22ef168 fix typo
fe21b75 fix charm arch for GCC
7876320 GCC: update for 4.9.0 and ISL/CLooG
29ca7ee dynamically determine compiler part of NAMD target arch, add CUDA config option, fix typo
7aaa1eb fix copying during install_step (skip .rootdir symlink), fix sanity check
034bbf5 add strip
7330807 fix (big) typo
2aa1674 namd_arch is no longer mandatory since it has a proper default
e49ccaf add custom sanity check, add logic and extra options to determine configure commands
212bd50 retain symlinks
e1e60e5 fix typo
4194185 added a runcmdcp easyblock
c7d928c Update GCC easyblock for gcc-4.9
dea1ba5 fix order of build options (again)
86ac552 remove space in -j
103734c fix typo
20b5b54 fix order of arguments for Charm++ build
072ed18 fix determining Charm++ subdir
65b4d3c add debug info on building Charm++
2a9961e really fix specifying subdir to build Charm++
0cc870c fix specifying subdir to build Charm++
b060447 fix typo
f082dbf get rid of files_to_copy easyconfig parameter for NAMD
eb0ffb2 make sure we obtain a dict from ConfigureMake.extra_options
5c20162 add support for specifying extra_vars in MakeCp.extra_options
4deaad0 more style cleanup, drop charm_ver since it can be derived automagically, use filetools functionality
1181f71 add path option to build_step in ConfigureMake easyblock to support running make in subdir
2ca4bd3 add support for configure_cmd_prefix easyconfig parameter in ConfigureMake easyblock
115cab4 style fixes
4769ba9 Merge branch 'develop' into namd
a6cacd2 Merge branch 'namd' of github.com:georgets/easybuild-easyblocks into namd
67614ce Merge pull request #6 from JensTimmerman/patch-1
22e5911 fixed static extra_optiosn namd easyblock
6aac83f modeller easyblock
6fa0416 Merge pull request #391 from boegel/mathematica_gui
f166d33 fix Mathematica installation when X forwarding is enabled
02757da bump version to v1.12.1dev
17953f6 bump version to v1.13.0dev
2ae41f9 Merge pull request #387 from hpcugent/develop
3c1f570 Merge pull request #386 from boegel/EBv1.12.0
f2e257e fix typo
04d0fdd cleanup v1.12.0 release notes
880a69b bump version to v1.12.0, update release notes
5d0b32a Merge pull request #385 from boegel/fix_bugs
a13d6aa Merge pull request #366 from wpoely86/clang34
343ede9 fix typos
f942ba7 make sure libcurses.a is linked in together with libreadline.a
b141bb1 explicitely link with static readline library
34bd964 Clang: remove empyt line
31e6c82 Clang: fix remarks
a5616e9 Merge pull request #380 from boegel/fix_PerlModule
b9492a1 fix remark
fd50835 Merge pull request #384 from boegel/fix_bamtools
32b016f Merge pull request #383 from boegel/python_readline_static
b0145a0 make sure we're (still) in the start_dir, otherwise the glob.glob will return an empty list
c3cda3d add debug info in MakeCp easyblock
4cb3965 Revert "include magic '*static*' string to get libreadline symbols included in static libpython"
049157d add -lreadline to fix linking with Python library
14f8036 include magic '*static*' string to get libreadline symbols included in static libpython
e08382a fix full path to static libs
cfc1fde statically link readline/ncurses libraries
b636374 Merge pull request #365 from boegel/gcc_sanity_check
9701b37 also run 'Perl Build build' for Perl modules (usually not required, but sometimes it is)
d3425ba correct name of OpenSuSE 32-bit package required for multilib
0ec8d04 enhance sanity check for multilib case
01bc666 enhance sanity check in GCC easyblock such that it also passes/works on OpenSuSE
d850c82 Merge pull request #379 from wpoely86/gcc
96dbf42 gcc: update glibc 32 bit names
aba6c40 gcc: fix indenting
a24dd32 gcc: multilib remark correction
2efb9e9 Merge pull request #367 from pescobar/makecp-glob
ceb529a Merge branch 'develop' into gcc
b060da9 gcc: add support for multilib
bf35927 Clang: fix for usage of all
ebb3555 Clang: use the all keyword
29b2ca6 Merge branch 'develop' into clang34
efbe27d Clang: add check of build targets
e53c39a Clang: disable sanitizer tests when vmem limit is set
b5eaad0 Merge pull request #378 from boegel/fix_unit_tests
7ebb179 fix typo
10d4787 don't hardcode default values for extra options
c1592b5 refactor to make all extra_options return a list of tuples rather than a dict, conform the framework v1.x API
d259785 enhance unit tests to verify type of return value of extra_options() static method
4b7dec4 gcc: cleanup of code
4578625 refactor extra_options in existing easyblocks
5943113 fix unit tests after changes in framework
2d666f7 Merge pull request #370 from boegel/python_readline
ad709f5 Merge pull request #377 from boegel/fix_unit_tests
d068e00 fix unit tests after changes in framework
0878a0d Merge branch 'develop' of github.com:hpcugent/easybuild-easyblocks into namd
f4e27c4 Merge pull request #376 from boegel/fix_unit_tests
2f3f839 fix defining tmp_logdir config setting
1a9cd39 Merge pull request #375 from wpoely86/imkl
b8e0f5f imkl: small remark in sanity check
4f8e834 imkl: updated sanity check
430560e imkl: make version check more correct
2be07ae Reworked after remarks
17db841 imkl: some cleanup and added some libs to the sanity check
0217cf4 imkl: install everything with version 11.1.1
b9cddae IntelBase: allow to add lines to silent.cfg
69cfd31 add support for building/installing OpenFOAM-Extend
d4591cd Revert "get rid of senseless value for $WM_MPLIB in case of OpenMPI build"
4e18a9a make sure dependencies are picked up by setting proper premakeopts
930c4d3 get rid of senseless value for $WM_MPLIB in case of OpenMPI build
4d16bd5 merge two very similar if-elif-else blocks
719fd4b pick correct WM_MPLIB value for OpenFOAM-ext with goolf
f8e0c95 add ported and enhanced easyblock for MUMPS
1b71713 refactoring + style fixes OpenFOAM easyblock
6223575 add missing shutil import
82e9231 correct use of 'staged_install' key
2528219 correct specification of 'staged_install' easyconfig parameter
64438f0 add support for staged installation of CPLEX
33a32d2 Merge pull request #371 from pescobar/ipmi-cpath-fix
f65ea31 fixed impi easyblock to correctly setup CPATH
ef37522 Revert "fixed impi easyblock to correctly setup CPATH"
ea33033 fixed impi easyblock to correctly setup CPATH
642cc5d fix ordering in import line
408ad0c fix typo
f3628e4 fix readline module specs in Modules/Setup.dist
037dd24 add sanity check for readline
806bd85 Merge pull request #369 from hpcugent/v1.11.x
b1058aa changed the loop as @stdweird suggested. Also changed comment
5bf1dfd Merge branch 'v1.11.x' into develop
4c60550 Merge pull request #368 from boegel/v1.11.x
839d14b bump version to v1.11.1, update release notes
18d3270 added glob support in generic makecp block
f8c9745 bump version to v1.11.1dev
205a18e bump version to v1.12.0dev
06a49d9 Merge pull request #362 from hpcugent/develop
7eccbef Merge pull request #361 from boegel/develop
e6cfcd5 fix typo
2c63aee N=1
81fb09c fix release date of v1.11
2207867 bump version to v1.11 and update release notes
25d3d75 Merge pull request #360 from boegel/fix_bugs
6c4a3df remove setting of CMAKE_PREFIX_PATH, as it breaks existing builds
813e64a don't include bin/lib directories, since they point to ia32/bin and ia32/lib
d453ceb don't inherit module guesses for Intel MPI, $CPATH shouldn't be set
7d9304c fix typo
0c0bdab restore original $LIBRARY_PATH
4ba0173 make sure CPATH setting are correct for Intel MPI
81b4b9d make sure directory exists before we create a file in it (how did this ever work?!)
7b58270 properly create dummy local nwchemrc file, close to force sync to disk
56ed26e make sure $LIBRARY_PATH is also set for Intel compilers and Intel MPI
3d5e020 clarify comment
52672a8 unset $LIBRARY_PATH for ALADIN build
f927b49 Merge pull request #350 from boegel/suitesparse4
ab96dd9 Merge pull request #347 from boegel/netcdf
b4014d9 Merge pull request #359 from boegel/contrib-python-openssl
142a397 enhance custom sanity check commands to check for SSL support
a8a78b0 fix determining whether OpenSSL is loaded/used as a dep
11f4e02 Merge pull request #346 from wpoely86/clang34
b5696bc configure build to pick up provided OpenSSL via Modules/Setup.dist
c11f0ba fix sanity check for recent OpenSSL versions (lib vs lib64)
a6d1ee2 clang: don't use polly by default
06e0fb2 very minor whitespace fix
e5bb2a7 Merge pull request #353 from MRCE/master
fd97be3 fixed some formatting
4031586 Merge pull request #351 from wpoely86/cmake_env
44ecd50 Merge pull request #352 from wpoely86/pythonpackage
902d964 cmakemake: split long line
92b5c32 Merge pull request #348 from boegel/vscpythonpackage
f0bd842 add log.deprecated in VSCPythonPackage constructor
2ff542d Merge pull request #341 from boegel/recent_tbb
559e8db Added a python block that optionally builds against OpenSSL if a config has OpenSSL as a depenency.
505609e Add rudimentary support for NAMD
0eae96c pythonpackage: use makeopts instead of buildopts
1ccf4f2 Pythonpackage: use buildopts in the build step
a6ed2a5 CMakeMake: no magic constants
d9b0909 CMakeMake: added prefix path
78eed9d CMakeMake: fix typo
2318119 CMakeMake: made a typo
e43a6e9 CMake: added search paths for includes and libraries.
8d16b85 fix typo
891ea58 fix sanity check for recent SuiteSparse versions
cf62138 update SuiteSparse easyblock, and clean it up a bit
84c85e6 Updated Clang easyblock to support build with polly
1f150c5 add easyblock for installing vsc-* Python packages that include their own vsc namespace
198cd1c make easyblock for version-independent python packages truly version independent and fix shebang line for install Python scripts; deprecate VersionIndependendPythonPackage, replaced by VersionIndependentPythonPackage
d6e3d53 'correctly' pass exts_filter for Python packages
f3c5497 add easyblock for netcdf4-python
9a6b07d add support for configuring recent netCDF versions using cmake
3bba99d Clang: reworked based on review
b23637d Clang: updated to allow 1 stage builds
20b1f24 Clang: make ready for clang 3.4
1b33541 bump version to v1.11.0dev
a1a4bf8 Merge pull request #344 from hpcugent/develop
0313af5 Merge pull request #343 from boegel/develop
8b5bd86 bump version to v1.10, update release notes
8a928e1 Merge pull request #342 from boegel/fix_bugs
abb2f2e extend noqanda for Qt
e38e1ea fix symlink validation
5e806df add support for installing recent tbb versions
e571ece Merge pull request #340 from boegel/fix_bugs
5d89893 correct local_nwchemrc now that tempfile.gettempdir() yields a unique dir
47f2dc8 Merge pull request #339 from boegel/fix_bugs
26493b5 fix Python 2.4 compatibility of GROMACS easyblock
e6a3186 Merge pull request #338 from boegel/intel_tools
8494b13 fix imports
6607cf3 add missing imports
05f57f5 fix Inspector, ipp, tbb and VTune easyblocks w.r.t. silent.cfg entry names
06069cb Merge pull request #337 from boegel/cuda_qa
ec8a504 further tweak CUDA noqanda
369fba4 Merge pull request #336 from boegel/cp2k
11cd6a5 fix typo
7bcb119 make sure libxc root is available further down
247dc53 add log message for building without LibInt/libxc
43b557d drop useless libint/libxc easyconfigs parameters in CP2K easyblock
ccc804b revert to not including libxc support by default
a4a09cd fix definition of test_core_cnt
06f2b68 minor style fixes
63fe1bb CP2k: small add
1fb619b Merge pull request #335 from boegel/gromacs
185f8b3 drop non-existing libmkl.a
0eb84f7 Revert "correct value passed to -DMKL_LIBRARIES"
0715fcc correct value passed to -DMKL_LIBRARIES
af1c1cd fix disabling of GSL
1a5f40c enable GSL when provided
6714edc add missing import
24e2e74 make very sure $OMP_NUM_THREADS is set to 1, to avoid hanging regression test
36bcadc tread_mpi is not compatible with MPI
85799a8 fix sanity check, check for static libs
4800c8c specify release build and preference for static libs, add support for building with OpenMP support enabled, specify home of CUDA explicitely, only checking for BLAS/LAPACK/FFT for recent GROMACS versions
b596779 add missing import
71a6031 make very sure that a decent BLAS, LAPACK and FFT is found and used
9f718ea make enabling/disabling MPI/GPU explicit
f1f13cc fix GROMACS libs sanity check paths
49566df fix sanity check
62a408c fix imkl check
1b13509 add easyblock for GROMACS
212c289 make sure backup dir used for /Users/kehoste/intel is a unique dir
2124838 Merge pull request #334 from boegel/python_preinstallopts
70522d0 pass preinstallopts in test_step, set custom preinstallopts for scipy in configure step
d3c967d add missing super call
eb3de06 CP2K: better check for multicore in tests
b1762ac CP2K: definied multicore constant
5f118b0 fix determining active compiler family
22df3d2 CP2K: moved libxc version to a constant
38db785 set extra installation options for recent scipy versions
f5a35f1 fix order of det_pylibdir call vs super call, deps need to be loaded first
023560f fix typo
655d5d5 pick up preinstallopts when installing Python packages
bbd6dca Merge pull request #333 from boegel/intelbase
87135f4 call set_tmpdir so tempfile is initialized like in an actual eb run
11552d1 make sure local intel dir is housed in a common tmp dir
71a9fef add debug info
732761a Merge pull request #332 from boegel/rpm_notestinstall
976ae3b fix order of rpmrebuild options
2260915 create rebuilt RPMs path
e944306 add --notest-install to rpmrebuild command to skip install test (which will fails in case of deps)
9fc3667 Merge pull request #331 from boegel/fix_bugs
0645607 remove broken symlink if present
f04a207 CP2K: reworked after comments in PR
9546a31 Merge pull request #317 from boegel/QuantumESPRESSO_CPP
3ee8e61 Merge pull request #319 from boegel/esmf
574b8c6 Merge pull request #329 from boegel/versionindependendpythonpackage
d396ff1 Merge pull request #318 from wpoely86/charmm
397c024 fix remarks
4954824 Merge pull request #273 from wpoely86/imkl
ab3457f fixed remarks
943909a fixed remarks
3d69f08 CHARMM: updated to remarks in PR
d3c94b6 Merge pull request #6 from boegel/imkl
4154fa4 Merge branch 'develop' into imkl
286a9d2 Merge branch 'imkl' of github.com:wpoely86/easybuild-easyblocks into imkl
4fb2835 Merge pull request #328 from boegel/CUDA_QA
e090591 extend noqanda for CUDA
61c5e9c Merge pull request #327 from boegel/fix_impi_version_checks
18236eb fix version checks in impi easyblock
549d7f6 FSL: fix detection of machine architecture
e44f1e2 Merge pull request #325 from boegel/new_intel_tools
f471c85 improve comments w.r.t. constant for silent.cfg parameters
a32a929 fix typo
061db5b impi 4.1.2 requires specifying full install path again >_<
1092d8b fix imkl sanity check for recent version + style fixes
946b35e fix support for building FFTW wrappers for recent imkl versions
79c1989 always override install path for recent impi versions
724bef6 fix icc/ifort sanity check for 2013_sp1 versions
63254a8 fix silent.cfg support for installing recent Intel tools
d058a13 Merge branch 'develop' into impi3
3e93110 fixed docstring
cd3c772 added check for _ctypes, this should always be available
c0da690 CP2K: updated easyblock to version 20131205
880e8b1 added the version independend python package
6577efe removed a check on always having a python module available, just having pylibdir set is fine
3ced42c Merge pull request #320 from boegel/samtools-0.1.19-support
1b04af9 fix comment, add missing bin file for v0.1.19
80bb95e fix typo
b4bac92 clean up version-dependent list of binaries in SAMtools easyblock
709b213 Add Easyblock for CHARMM
7395710 link with multithreaded LAPACK libs for ESMF
719eb93 always include -w flag for preprocessor to supress warnings that may break configure
00f2a9b added support for samtools 0.1.19
f4b4752 Merge pull request #314 from boegel/version_bump
bf41c7b bump version to v1.10.0dev
49a1e89 Merge pull request #312 from hpcugent/develop
99fb023 Merge pull request #310 from boegel/release_notes
4da7b4b fix release date for EB v1.9.0
38f383b Merge pull request #311 from boegel/fix_bugs
9460b87 fix typo
cb5591b make generic CMakeMake and MakeCp easyblock more robust w.r.t. extra options
5b190c5 bump release date
aea0d9c update release notes, bump version to 1.9.0
77af4bf Merge pull request #304 from boegel/score_p
857dbe2 clean up imports
7355b02 Merge pull request #278 from boegel/picard_GATK
d3958ab fix check to see whether build dir was located
89b7c74 fix typo
43d1e93 figure out build dir via os.listdir
a9f0f40 correct compiler option for Scalasca1 with GCC
4d10fce correct super call in EB_Scalasca1 easyblock, correct mpi option for Intel MPI in Score-P easyblock
ad98164 fix typos
83cca37 add easyblock for Scalasca v1.x
06729c8 refurbish Score-P easyblock to also be used for other tools following the Score-P style of configuration
25306a1 Merge pull request #309 from wpoely86/openbabel-bugfix
fa74cd7 OpenBabel: bug fix: do not overwrite PYTHONPATH
3021a52 Merge pull request #308 from boegel/fix_bugs
15bb07d check whether toolset is None, only then derive from compiler family
34ee98d add support in Boost easyblock to specify toolset in easyconfig file
962cc18 Merge pull request #307 from boegel/fix_bugs
7452a50 fix typo
41e6977 make sure self.license_env_var is defined in IntelBase easyblock
02f0749 Merge pull request #306 from boegel/fix_bugs
f2b4d5f fix extra_options 'super' call in Clang easyblock
496fa6b Merge pull request #300 from wpoely86/libint2
57abc2a Merge pull request #305 from boegel/openbabel
f421927 Merge pull request #297 from wpoely86/pyquante
ae14737 make use of spaces consistent in updating configopts
2e4e826 add missing space
d48a466 fix Python include path specified to cmake
a8af5b8 add get_software_version import
5218e02 only enable Python bindings when Python is available, also provide Python lib/include paths to CMake, add custom sanity check paths in easyblock
78dbbf7 Merge branch 'develop' into openbabel
06405dc Merge branch 'openbabel' of github.com:wpoely86/easybuild-easyblocks into openbabel
5302b2f libint2: re-add sanity check to easyblock
40d0cbb OpenBabel: activate separate builddir in easyblock
061a01d Openbabel: change block to use seperate build dir in CMakemake block
836080c specify that library subdir which contains libbfa.a is required
981c321 use get_software_libdir for determining library subdirs rather than hardcoding 'lib'
526f180 correct super calls
7a3a967 fix setting configopts for deps
aa0fcf9 correct class name in Score-P easyblock
d998c97 add easyblock for Score-P
60e6473 Merge pull request #303 from boegel/addParaview
063e34d get rid of custom easyblock for Paraview, no longer required with enhanced CMakeMake easyblock
879511e fix default value for srcdir parameter for CMakeMake
dd15cd0 enhance CMakeMake easyblock to specify srcdir via easyconfig parameter, and to perform out-of-source builds
ee6ab90 Merge branch 'addParaview' of github.com:Bart-CER/easybuild-easyblocks into addParaview
4dfb912 Merge pull request #302 from boegel/addNoQaToQt
4c19411 update release notes
19b6cd3 fix whitespace/indentation issues
405134d Merge branch 'develop' into base
89574b3 Merge pull request #301 from boegel/hdf5_besserox
5f547f1 stop using self.toolchains.options['usempi'], use self.toolchains.options.get('usempi', None) instead
2b3aa34 avoid code duplication, consistently use .get('usempi', False)
f16991e Merge branch 'hdf5-serial' of github.com:besserox/easybuild-easyblocks into hdf5_besserox
8898c32 Merge branch 'bugfix_hdf5_eb' of github.com:besserox/easybuild-easyblocks into hdf5_besserox
070e0e5 OpenBabel: some small revisions
50f3459 libint2: some small changes
6ad06af Merge pull request #279 from boegel/Allinea
55ac59e fix missing import
389a97b make sure Allinea tarball is extracted
4c87a6d let's avoid infinite recursion, shall we?
eac2e79 remember kids, extra_options is a static method
ab398dd use extra_options of super, required for install_cmd
4c1b5f4 readd missing import
4396c6c use install_cmd in generic Binary easyblock for Allinea easyblock
adf7176 Merge branch 'develop' into Allinea
c823f89 get rid of part that generates system config file, leave that to the user
1ecca34 libint2: moved sanity check and update CPATH
634c71a Added block for openbabel
a291e27 Merge pull request #298 from boegel/IntelBase_license_server
49f2c64 stop hardcoding INTEL_LICENSE_FILE as name of license env var
9933483 define self.license_env_var with name of env var to set in module
6f49bb2 make sure $INTEL_LICENSE_FILE is set when using exist_lic
80617b1 clarify debug log msg showing contents of silent.cfg
dc58ec5 only use exist_lic if there are multiple license specs
f6ecb28 fix typo
2890bfa no indexing in a set
25c23d4 only specify license file in silent.cfg if there's only one file, otherwise (multiple files, or license server spec(s)), use 'exist_lic' activation type and drop license file entry
1cd9b70 stop hardcoding defaults for IntelBase specific easyconfig parameters
01ccbbb fix indent
581830a fix typo
9250ad9 fix definition of lic_env_var_vals
ba5aee0 fix keys license_specs, add error detection
f1c0037 fix typo and comments
19013f8 add support for license server specifications, also pick up $LM_LICENSE_FILE, retain all valid license specifications for one env var
8ec0745 Added block for PyQuante
cd570c4 Adding an easy-block for paraview.
8a41de0 Remove the HDF5-serial easyblock, and update the HDF5 easyblock to allow build with non-MPI toolchains
28a21d7 Three no_qa added to make it through the configuration. Not sure if everybody is happy with this change, however, some of the messages that are passed now, are perhpaps not errors, but might be interesting.
096fdb1 Merge branch 'develop' of github.com:hpcugent/easybuild-easyblocks into hdf5-serial
fafc529 Merge pull request #291 from boegel/arb
8e2db46 add debug logging for 'make' to configure
e579cd5 define self.subdir, since we can use absolute paths in make_module_req_guess
594827b correct tweaking of PATH and LD_LIBRARY_PATH
bce6c8b really ignore exit code of make to configure
858169d run make to configure before actually building, ignore exit code
5d61cc1 correct use of os.pathsep.join
3fdc7bc use pass for configure, build with make after setting env vars and make options
af0beb9 fix remarks for ARB easyblock
c503e0d Merge pull request #289 from boegel/master
b024d84 add build status badges for master/develop branches to README
83daa75 Merge pull request #288 from boegel/binary_install_cmd
6911fe9 New EasyBlock for HDF5-serial
c65c0ec add missing import
782b8a9 add support for specifying install command in Binary easyblock, use it for ABAQUS and EPD
8a2514c Merge pull request #287 from boegel/conf_prefix_opt
48fca73 clean up long line
1e55184 fix long line
7902d70 allow to customize --prefix
6b858da Fix the configure option for Szip in HDF5 EB. It is actually --with-szlib instead of --with-szip
cf23595 Only define RUNPARALLEL if MPI support is enabled for HDF5
39e5a1d Merge pull request #282 from hpcugent/v1.8.x
3f5bec3…
sylmarien
referenced
this pull request
in ULHPC/modules
Jun 29, 2015
…90b5
50e90b5 Merge branch 'develop' into uni.lu
28055a6 Merge pull request #1755 from wpoely86/gcc
7346061 Fix comment in GCC-4.9.3.eb
a0d9b67 checksum update for GCC-4.9.3
6628d36 fix checksum GCC-4.8.5
509116d new gcc versions
0b741b9 Merge pull request #1747 from boegel/blast2231_intel2015a
c768155 {bio}[intel/2015a] BLAST+ 2.2.31
ce0ba31 Merge pull request #512 from boegel/unite_Vampir
c111f8b Merge branch 'develop' into unite_Vampir
0c577d7 trivial style fixes
32f8795 Merge pull request #1733 from boegel/pyqt4114_2015a
c356dd4 Merge pull request #1444 from xaver42/xmltwig_goolf1.4.10
2c358ad Merge pull request #8 from geimer/unite_Vampir
d32f0dd Check for MPI-specific driver during sanity check
4eee984 Merge pull request #1738 from boegel/freetype26
75dd83e Merge pull request #1735 from boegel/gcc510_m4
be2c639 {vis}[*/2015a] freetype 2.6
18d4928 style fix
aa6dbf4 Merge pull request #1736 from boegel/cmake323
018f2c3 {devel}[*/2015a] CMake 3.2.3
3b4f369 Merge pull request #1734 from boegel/Qt486_intel2015a_fix
f6d70f7 use empty version in dummy toolchain so dependencies get loaded
9697a87 Merge pull request #1731 from boegel/ipython323_foss2015a
3531d75 remove unrequired patch in M4 1.4.17 easyconfig
c1d5caa add M4 as build dep for GCC 5.1.0
2afe565 Merge pull request #1730 from boegel/ipython323_intel2015a
7684194 Merge pull request #1727 from boegel/openmpi_style_fix
9f19737 add patch for Qt 4.8.6 with intel/2015a
0ff8e2b add PyPI source URL for IPython 3.1.0
a79e011 add PyPI source URL for IPython
6539abe add PyPI source URL for IPython
9c49475 Merge pull request #1732 from boegel/boost1580_py2710
2beb46e correct IPython version to 3.2.0
8fdf2e6 correct IPython version to 3.2.0
d668126 Merge pull request #1729 from boegel/hdf5_1815p1
0cb03e1 {vis}[*/2015a] PyQt 4.11.4
8cb2351 fix change in sanity check paths for OpenMPI 1.6.4 and 1.6.5
1c0d683 {data}[*/2015a] HDF5 1.8.15-patch1
49bb043 {devel}[*/2015a] Boost 1.5.8.0 w/ Python 2.7.10
662bee7 {tools}[foss/2015a] IPython 3.2.3
a52548e {tools}[intel/2015a] IPython 3.2.3
bab70f9 Merge pull request #1728 from boegel/remove_buildstats
15e3c19 remove buildstats that snuck in
5a80280 fix syntax issues
4917b54 style fix in OpenMPI easyconfigs
37ca9a1 Merge pull request #1726 from boegel/bibtexparser
ff2d728 {tools}[foss+intel/2015a] bibtexparser 0.5 + 0.6.0
d09e02a Merge pull request #1712 from npklein/GLib-2.40.0-goolf-1.7.20
87e5724 delete empty line
4f83fd2 Merge pull request #1703 from npklein/Python-2.7.9-goolf-1.7.20
032576f Merge branch 'Python-2.7.9-goolf-1.7.20' of github.com:npklein/easybuild-easyconfigs into Python-2.7.9-goolf-1.7.20
2f000ca add dependency Tk-8.6.3-goolf-1.7.20-no0X11
a24cf6c Add Tk
48aed69 Merge branch 'mpiBLAST' into uni.lu
d3bfcb1 Fixing toolchain version number error
14b2380 Merge pull request #1658 from hpcuantwerpen/modules/soba
84842c8 readd .eb file after accidentally syncing it out
a554831 Merge pull request #1720 from boegel/Xmipp_31_goolf1410_incl_deps
5217676 Merge pull request #1719 from boegel/Xmipp_31_intel2015a
7f9441f Merge pull request #1723 from boegel/SPIDER_foss2015a
1c5365d use Java 1.7 as dep in Xmipp 3.1 easyconfig
7b78b8c {vis}[foss/2015a] SPIDER 22.10
ddeb3fe Merge pull request #1680 from npklein/snpEff-multiple
07175b3 Merge pull request #1722 from boegel/https_pypi
56cf9da fix PyPI URLs: use https
46ca52b Fix merge conflicts
32292e9 lead
e5f6967 leading space, dependencies moved below sources
1f6f4ec Merge pull request #1693 from boegel/Autotools_GNU_510_225
8b9929f Merge pull request #1669 from boegel/GNU_510_225
a8cd8e0 Merge pull request #1716 from npklein/cairo-1.12.18-goolf-1.7.20
fb31e61 Merge pull request #1721 from geimer/Cube_update
9ddfed1 fix wrong indent
f61c083 leading space, align with common dependencies
31abb3b leading space
5bcead1 leading space
639239f Add easyconfig for latest release which no longer includes Java reader
1608365 Cosmetics and added checksums
5f30075 add missing easyconfigs, fix FFTW dep in Xmipp easyconfig for foss/2015a
184a2db add dependencies libffi and gettext goolf-1.7.20
be641b1 {vis}[goolf/1.4.10] Xmipp 3.1
4f2f3dc add bzip2 and Tcl goolf-1.7.20 dependencies
e6df0d7 fix Xmipp easyconfigs: naming, patches, deps + add foss/2015a equivalent
f53210f Merge pull request #1711 from npklein/fontconfig-2.11.1-goolf-1.7.20
92e0aaa fix remarks w.r.t. missing comments
bc5a565 Merge branch 'Python-2.7.9-goolf-1.7.20' of github.com:npklein/easybuild-easyconfigs into Python-2.7.9-goolf-1.7.20
f591d8b add depedency SQLite-3.8.8.1-goolf-1.7.20.eb
360d993 few changes from @boegel his comments
a8c06b3 Merge pull request #1710 from npklein/freetype-2.5.3-goolf-1.7.20
0b818f5 Merge pull request #1713 from npklein/libjpeg-turbo-1.3.1-goolf-1.7.20
af6a2df Use minimal toolchains
40b1245 Merge pull request #1706 from npklein/libgtextutils-0.6.1-goolf-1.7.2
8ca3279 add .eb after file
38a40b4 Add dependency NASM-2.11.05-goolf-1.7.20.eb
325c1f3 Merge pull request #1661 from geimer/Score-P
746c409 remove fontconfig-2.11.1-goolf-1.7.20
227baad add .eb to fontconfig-2.11.1-goolf-1.7.20
5ab1597 add cairo dependency pixman 0.32.6-goolf-1.7.20
9d49aa6 Merge pull request #1715 from npklein/expat-2.1.0-goolf-1.7.20
4a625e3 add blank line, left align }
e37e7ba Merge pull request #1714 from npklein/libpng-1.6.12-goolf-1.7.20
8acb477 Don't use ALL_CAPS: VAMPIR -> Vampir
abed07b The demo package is updated every 2-3 months, i.e., a checksum doesn't make much sense
599c5fd .eb file for cairo-1.12.18-goolf-1.7.20
db1282d .eb file for expat-2.1.0-goolf-1.7.20
e1f3203 Merge pull request #1692 from boegel/GC3Pie_223
eaed5bd .eb file for libpng-1.6.12-goolf-1.7.20
f93360c .eb file for libjpeg-turbo-1.3.1-goolf-1.7.20
30c2d6d .eb file for GLib-2.40.0-goolf-1.7.20
5bf3948 remove Python-2.7.9-goolf-1.7.20.eb should be in Python branch
350e1cd .eb file for fontconfig-2.11.1-goolf-1.7.20
3aa0e15 remove Python-2.7.9-goolf-1.7.20.eb should be in Python branch
c7ea469 .eb file for freetype-2.5.3-goolf-1.7.20
3ede896 Change dependencies to include SQLite and OpenSSL
2959ff5 remove easyconfig for GC3Pie dev version that crept in
b19f9de fix indentation
f732879 Merge pull request #1704 from npklein/LibTIFF-4.0.3-goolf-1.7.20
5287f61 fix remark
b60a930 Change http to https
646a2bd Add easyconfig for R with Rmpi (which requires patching)
eec682b Merge pull request #1709 from npklein/Bowtie2-2.2.5-goolf-1.7.20
d476d79 Merge pull request #1681 from npklein/SAMtools-0.1.19-goolf-1.7.20
a7b9d66 remove snpEff files with wrong file name
382c292 Change v<version> to <version> in filename
74a1ca3 Merge pull request #1682 from npklein/PLINK-1.07-x86_65-goolf-1.7.20
a5f6037 removed first empty line
e867096 Use SOURCEFORGE_SOURCE as source urls, remove import time and seconds from epoch
2c86437 Merge pull request #1675 from npklein/verifyBamID-1.1.2-goolf-1.7.20
daab344 Merge pull request #1708 from boegel/fix_unit_tests
b69ab31 fix easyconfigs unit tests after making ModulesTool a non-singleton class (cfr. https://github.com/hpcugent/easybuild-framework/pull/1299)
551aedc Merge pull request #1699 from boegel/deap_source_urls
a336ced Merge pull request #1702 from boegel/Pillow
343db5a .eb for libgtextutils-0.6.1-goolf-1.7.2
0327fef .eb file for LibTIFF-4.0.3-goolf-1.7.20
9eb0080 .eb file for Python-2.7.9-goolf-1.7.20
18d6aa4 Adding HMMER-3.1b2, PLINK 1.07 and 1.90, SNPTEST and Trimmomatic.
46d48a8 {vis}[*/2015a] Pillow 2.8.1
71581ec .eb file for Bowtie2-2.2.5-goolf-1.7.20
7bc3003 fix source_urls for deap Python extension
bb24c85 Merge pull request #1697 from boegel/argparse_source_urls
a26edce fix source_urls for argparse Python extension
f628238 include both lib and lib64 in $PYTHONPATH in GC3Pie easyconfig
d3d5319 fix source_urls for GC3Pie easyconfig
64c1bc8 install GC3Pie as a bundle of Python packages
09f1096 Merge branch 'mpiBLAST' into uni.lu
e536b48 Merge branch 'ASE' into uni.lu
c5f801e Merge branch 'PyQt' into uni.lu
6a960e1 Merge branch 'matplotlib' into uni.lu
c33a02d Merge branch 'R' into uni.lu
6347f77 Merge branch 'QuantumESPRESSO' into uni.lu
13a8c54 Merge branch 'Python3' into uni.lu
7dd27be Merge branch 'Python' into uni.lu
69aefc3 fix GC3Pie dependencies, add sanity check command
6e151e9 {devel}[GNU-5.1.0-2.25] Autotools 20150215
f77fea6 {tools}[dummy] GC3Pie 2.2.3
cbdbc12 Adding OpenMPI infiniband module patch patch + adapting existing patches
77fcd51 Fixing Cython extension url
9d7fc42 Merge pull request #1 from boegel/QuantumESPRESSO
bef43d6 Adding PyQt-4.11.3-ictce-7.3.5-Python-2.7.10 + dependencies
8bca883 Adding mpiBLAST-1.6.0-ictce-7.3.5
d9c1e76 Fixing bare versionsuffix
6f94a29 Remove variant from file name due to EB policy/limitation
46fc4a3 Modify the example license_file value as suggested
fe5b11b Add easyconfig for Vampir demo version
bb8bba9 Make variant easily configurable
172f958 Renamed files to reflect supported platform
9c9bc2d Added myself as an author
b63db53 Add checksums
b277923 Apply change to install_cmd as requested by review
e38cc33 Merge branch 'unite_Vampir' of github:boegel/easybuild-easyconfigs into unite_Vampir
7d34330 Merge branch 'develop' into unite_Vampir
bcee4b1 Adding Python 3.4.3 with ictce 7.3.5
654d988 Use %(version)s where necessary
8a2ca65 Add corresponding easyconfig for VampirServer
7943c8d Update to latest Vampir release, adding suggested parameters for silent installation
2aeb48a Fixing zlib dependency conflict
80f5a84 Adding missing dependencies
7280f71 Fixing extensions list
990643e Adding Python 2.7.9 and 2.7.10 + dependencies
bfc85bc Merge branch 'develop' into uni.lu
60a42da Adding ASE-3.9.0.4465-ictce-7.3.5-Python-2.7.10
6d867b9 Adding matplotlib-1.4.3-ictce-7.3.5-Python-2.7.10 + dependencies
f15b0f5 Delete PLINK-1.07-x86_64-goolf-1.7.20.eb
83ebc81 Change name of .eb file because it is already compiled (so goolf not used)
0c3e759 changed double quotes to single quotes to conform with other .eb files
7cb1ac21 .eb file for PLINK-1.07-x86_64-goolf-1.7.20
3d0a57d Added easyconfig for Python 2.7.10 for our setup, with the latest extensions.
485b565 .eb file for SAMtools 0.1.19 with goolf 1.7.20
106f2e2 Add .eb files for snpEff v3.6 and snpEff v4.1d
367008c Adjusted Qt homepage and download URL
f047fd8 Merge branch 'develop' of github:hpcugent/easybuild-easyconfigs into Score-P
00fd395 Removed duplicated toolchain line
a57345f Merge branch 'verifyBamID-1.1.2-goolf-1.7.20' of github.com:npklein/easybuild-easyconfigs into verifyBamID-1.1.2-goolf-1.7.20
283ec6e Merge branch 'develop' into verifyBamID-1.1.2-goolf-1.7.20
c3e42e7 Merge branch 'uni.lu' of github.com:ULHPC/easybuild-easyconfigs into uni.lu
3a6740e Added easyconfig for MySQL (client only) based on goolf 1.4.10 and a corresponding one for it's dependency libevent.
4289fed Merge pull request #1674 from npklein/hisat-0.1.5-beta-goolf-1.7.20
7e801b6 Merge pull request #1676 from npklein/STAR-2.3.1z12-goolf-1.7.20
fb1ec01 Merge pull request #1672 from npklein/GenotypeHarmonizer-1.4.14
ac88a9a Extra space after executables, removed trailing /
5d83a5b Empty dirs list
975d6de Empty dirs list, removed double whiteline
8cd4a76 Update hisat-0.1.5-beta-goolf-1.7.20.eb
036e4af Update GenotypeHarmonizer-1.4.14-Java-1.7.0_80.eb
3ee04bc .eb file to install STAR-2.3.1z12 with goolf-1.7.20
04b6ed4 Update GenotypeHarmonizer-1.4.14-Java-1.7.0_80.eb
dfc74d9 move toolchain to correct position of GenotypeHarmonizer
419ef5a move toolchain to correct position
cd8f280 .eb file to install veryifyBamID-1.1.2 with goolf 1.7.20
6aa2875 Change structure, remove unnecesarry comments, make lines max 120 char long
63bd74a Add Java suffix
ff1a012 Change formatting, remove unused variable, remove some coments
0f48903 Merge remote branch 'upstream/develop' into modules/soba
4bf2a08 Merge pull request #1673 from hpcuantwerpen/modules/qt
e3eb9ad Merge pull request #1666 from boegel/GLib_libxml2_dep
0862214 .eb file to install hisat 0.1.5 (beta) with goolf 1.7.20
533e2e9 .eb file to install GenotypeHarmonizer version 1.4.14 with Java 1.7.0
04f0dfd - fixed typo in source_urls for SQL::Abstract
85c7a46 Merge pull request #1576 from boegel/py256_svnversion
04720cd fix patches redefinition in Python 2.5.6 ictce/4.x easyconfigs
c530582 include comment in patch file
bd80a03 - changed source_urls and homepage
96abaf3 - moved file
784b9e8 fix double dep
6dab59b - SOBAcl-r18-intel-2014b-Perl-5.20.0.eb : added EasyConfig for SOBAcl
321625a use older libxml2 version in GLib easyconfigs using old toolchain (for compatibility with existing DOLFIN easyconfigs)
783e261 fix toolchain for libxml2 dep in GLib intel/2015a easyconfig
132a763 fix toolchain for libxml2 deps in GLib easyconfigs
ab02f47 {toolchain} GNU 5.1.0-2.25
e6da945 Merge pull request #1667 from pescobar/tophat-2.0.14
69afd7f Merge pull request #21 from boegel/tophat-2.0.14
4ed7c6c fix style issue
c5b214e Merge pull request #689 from pescobar/contrafold
2f14d41 Merge pull request #824 from pescobar/IMPUTE2
e522d27 Merge pull request #1075 from pescobar/bioperl-update
338788f moved easyblock line to top
8ae3cf4 renamed as @boegel suggested
42420e3 Merge pull request #1126 from pescobar/Pindel
91f2b1d bump to latest boost in tophat easyconfig
73c49e1 added Boost-1.58.0-goolf-1.7.20.eb
615c6a7 Merge pull request #808 from pescobar/AutoDock_Vina
09b2975 Merge pull request #1045 from pescobar/IDBA-UD
e26c667 Merge pull request #811 from pescobar/Check
da1f2b0 Merge pull request #760 from boegel/LAMARC
d2520b5 Merge pull request #1386 from pescobar/scanms
a30448b switched to zlib-1.2.7
5949aa6 renamed as @boegel suggested
78e386f Merge pull request #1043 from pescobar/STAR
4d7bbb1 Merge pull request #777 from JensTimmerman/ecore
26d6ec2 fix LAMARC filename
8bab0c9 fixed indentation
7aa4fbb added missing easyblock line
841006e Merge pull request #1160 from pescobar/bcftools
ebc3709 switched to prebuildopts
65110c1 Merge pull request #20 from boegel/bioperl-update
80a3ae5 Merge pull request #899 from boegel/ADF
68bdbcd fix typo
97eaf18 switched to prebuildopts
508c3e2 removed post install cmds, added patch
0a7faf6 added missing zlib dependency
10cc024 Merge pull request #1355 from hpcleuven/feature/tophat
3e2900d add missing easyblock spec
f4979b4 style fixes in files_to_copy
83d0b63 switch from premakeopts to prebuildopts
79c5796 Merge pull request #19 from boegel/bioperl-update
3613184 removed sanity check hack
6ae3bcf Merge branch 'develop' into bioperl-update
79eed36 Merge pull request #1059 from JensTimmerman/tabixx
fc4a6d0 removed duplicated patch file
024e73b bump tophat version
1996ddf Merge pull request #1412 from pescobar/PeakSeq
a144a86 Merge pull request #1476 from pescobar/tophat_2.0.13
3b24298 Merge pull request #828 from boegel/IMa2
589703d style fixes
dabb53e fixed small style remarks by @fgeorgatos
fba60a9 fixed remarks
0cc6021 Merge pull request #18 from rjeschmi/pr-1160
7bf7620 include missing libxml2 dep in GLib easyconfigs
fb559c9 fixed typo
2bb7142 fixed remarks
44d2e4e fixed patch file
e3143c4 Merge pull request #1665 from boegel/PLUMED_style
8d8fc70 Merge pull request #1035 from JensTimmerman/sailfish
a133fd1 move/rename patch for PLUMED
3652daa Merge pull request #1631 from rjeschmi/eb-git
614f338 Merge pull request #1100 from JensTimmerman/tecplot
dc299a5 Merge pull request #1662 from boegel/pr699
ba3328a fixed remarks
8b83f0e style fixes in PLUMED easyconfig
4231891 changed url
8300b3c fix typo
b99be64 Merge pull request #1596 from wpoely86/plumed
e7194f0 fix style remarks
5e8e28a removed old file
c6f55c3 fix long line
2867e79 added right zlib easyconfig
5147003 properly fixed .eb name now
7c76bca readded missing zlib-goolf-1.7.20 easyconfig
623b9a8 get rid of shared_lib_ext
2d6731e update blasr easyconfig & fix style issues
e39d1aa moved deps up under source_urls
d7d3960 added zlib as eb dependency instead of system dep
be89f2e use template %(version)s for patch name
7ac3150 style fixes in boost easyconfig
fe7b8fd Explicitly add easyblock='ConfigureMake'
34cce2f added CMake 3.0.0-foss-2014b
4066e7c added ConfigureMake where needed
64eeafd fixed remarks
9d5284b removed unwanted easyconfig
3bae856 added missing dependencies
4b4938b added sailfish, uses c++11, so no full intel support yet
7f8021b Don't run the Bloom tests for Jellyfish, they can randomly fail
5ec08a6 fixed typo
8d7121b Merge remote branch 'upstream/develop' into tophat_2.0.13
95e3c9d Merge pull request #847 from apanteli/contrib_Parallel-ForkManager
892755a Merge pull request #1483 from pescobar/MuTect
87fcdd4 Merge pull request #631 from boegel/OpenMPI-CUDA-fix
cac43de - GraphViz-2.18-intel-2014b-Perl-5.20.0.eb : new Perl interface to Graphviz
cad86d3 fixed sanity check and message on load
c9dc018 - Perl-5.20.0-intel-2014b.eb : added some extensions (needed for SOBA)
69f2f35 Merge branch 'develop' into OpenMPI-CUDA-fix
59a9148 Merge pull request #1375 from hpcleuven/feature/profiling
a7e9ef5 Merge pull request #11 from boegel/feature/profiling
5eec0de remove outdated comment
74138e8 Merge pull request #996 from tloizou/contrib_GATK
3573da0 Merge pull request #1016 from JensTimmerman/Jellyfish
c4a962d Merge pull request #1116 from JensTimmerman/ngspice
f4aadba Merge pull request #1006 from tloizou/contrib_PROJ
8cb5c6c Merge pull request #1101 from JensTimmerman/paraview
27fc5cd Merge pull request #1003 from tloizou/contrib_Theano
01fe2f3 adding the easyblock for ConfigureMake
3d3c324 Merge branch 'develop' into pr-1160
c5df41c Cosmetics
21a0a26 Updated easyconfigs
273386c Use %(version)s as suggested
2c70236 Merge pull request #617 from boegel/ncdf_ncdf4
dd6b829 Merge pull request #1002 from tloizou/contrib_picard_1.109
a80d2cd Fixed intermittent modifications after revert
59f6141 removed bad easyconfig
29c3488 Don't run the Bloom tests for Jellyfish, they can randomly fail
d0ecabf Revert "Delete impi-4.1.0.027.eb"
2730bfd Revert "Delete imkl-10.3.12.361.eb"
4c2b9ae Merge branch 'develop' of github:hpcugent/easybuild-easyconfigs into Score-P
f9fdbd6 Style Fixes
dfd5a4c fixed osdependencies for OpenMPI
301b11f Explicitly add easyblock='ConfigureMake'
a43ea95 Fixes after review
1c74b57 makeopts -> buildopts
20ca413 fixed remarks
b74af28 fixed tecplot ec name 6 remarks
5a247ac Explicitly add easyblock='ConfigureMake'
dcdc87c Explicitly add easyblock='ConfigureMake'
6dfc932 Explicitly add EasyBlock='ConfigureMake'
b933cb2 Merge pull request #1433 from hajgato/netcdf_foss2014b
32c3812 Explicitly add EasyBlock='ConfigureMake'
5264f8e Explicitly add EasyBlock='ConfigureMake'
dab5911 fixed remarks
7152b4b Merge pull request #877 from pescobar/cuda-6.0.37
e8952f1 added paraview for intel-2014b
19981e5 another typo fix in toolchain version
45e3c80 fixed wrong suffix
ed27a09 fixed ECore easyconfigs and dependencies, since it simply doesn't work with a openmpi built with gcc
4b5f4da Merge pull request #17 from boegel/cuda-6.0.37
fc0c5c7 - Qt-4.8.6-intel-2014b.eb : updated source_urls
ee063cc - Pango-1.36.7-intel-2014b.eb : added missing dependency ('libXft', '2.3.2') because of sanity check
bfe7601 include MD5sum for CUDA 6.0.37 source file
66514bd Merge pull request #1222 from hajgato/circuitscape4
b79d289 Merge pull request #727 from tloizou/contrib_ABINIT_parallel
00f7b94 PYPI_LOWER_SOURCE fixed
5c634f7 sourceLOWER added
325f893 Merge pull request #990 from tloizou/contrib_bismark
3a8ac44 Fixed configs according to comments
e6e6f48 synced with current develop, foss/2015a version updated
81a8141 Merge branch 'develop' of github.com:hpcugent/easybuild-easyconfigs into netcdf_foss2014b
8550a55 Fixing source_url
b395310 Merge pull request #1087 from hajgato/cuda_update
e486daf trial to remove Python modifications
21ceec8 Merge pull request #1299 from wpoely86/gnuplot5
27381d2 using separate python module
91aa792 removing ABINIT files; bismark branch
03a20f0 Changes in config file
1df688f correct version
374cfba Merge pull request #1396 from boegel/JUBE
884bc00 use autotools
283908c fix typo
067c81c Merge branch 'develop' into gnuplot5
3027f18 add source_urls using download.php?file=
0f21883 Merge pull request #995 from tloizou/contrib_DendroPy
b684e59 renamed to MuTect and updated download url
59b194e Merge pull request #1004 from tloizou/contrib_MATIO
1aabfaf Merge pull request #1499 from hajgato/gplk
a5f4228 Fixes in easyconfig
0c716a6 Fixed config
0900294 Merge pull request #1185 from hajgato/ncdf_upgrade
d3824d5 md5schecksum added
4454fbf Both packages use dependency GMP-GCC-4.9.2
f7b4c39 Merge branch 'develop' into JUBE
cf66efb SOURCELOWER -> SOURCE
662aeb0 commas corrected
b2b5443 add easyconfigs for JUBE 2.0.4 an 2.0.5
a81ac04 include checksum + switch to manual download in JUBE easyconfig
a3b95a6 Merge pull request #1657 from boegel/HDF5_gpfs
bd7aad0 Merge pull request #1654 from boegel/python279_tk
cb93221 Merge pull request #1195 from hajgato/htseq
31ab859 Merge pull request #1188 from hajgato/nwchem6.5
4e63794 versionsuffix added for matplotlib dependency
6bfc7b9 using GMP-GCC-4.9.2
a8a944b toolchain corrected in matplotlib
b1d2fff Added external matplotlib dependency and source changed to PYPI
06f6631 cURL added as dependency
d7c8a53 fix typo
d52f65e drop gpfs versionsuffix and use no longer existing --enable-gpfs configopt for recent HDF5 versions
ea08c98 Merge pull request #1656 from boegel/HDF5_1815
a8b8cd6 {data}[intel/2015a] HDF5 1.8.15
9e90bc2 Merge pull request #1653 from boegel/libXft_libXScrnSaver
a0c74ae Merge pull request #1655 from boegel/python279_cray_tk
6dbc626 add missing Tk 8.6.3 intel/2015a easyconfig
37f2410 kbproto is just a build dep
7e6618a use Tk 8.6.3 rather than Tk 8.6.4 as dep in Python 2.7.9 easyconfigs
04bfc48 include tk-devel is list of OS deps for Python 2.7.9 Cray easyconfigs, make sure 'import Tkinter' works
b559f80 include Tk as dependency in Python 2.7.9 easyconfigs
f0b78c2 {vis}[intel/2015a] libXScrnSaver 1.2.2 + libXft 2.3.2
c944c4a Merge pull request #1652 from boegel/qe_502_source_urls
e5ebd22 improve comment on generic source URL
be2f94d fix remark
9c8037f Merge pull request #1651 from hpcleuven/feature/GROMACS-5.0.5
bd81df6 fix source_urls in QuantumESPRESSO 5.0.2 easyconfigs
73db870 Gromacs 5.0.5-intel2015a easycofig
d02e5a7 cleanup source_urls
a3b6d8c Merge branch 'develop' into uni.lu
6857cd9 Gromacs 5.0.5-intel2015a easycofig
5af457a Merge pull request #1201 from rjeschmi/bowtie_newversion
a420cba Merge pull request #1650 from boegel/ABINIT_7104
7d95682 Merge pull request #1351 from rjeschmi/Cufflinks-foss
a1e0abd Merge pull request #1066 from hajgato/postgesql_and_perl_bindigs
0819fb8 Merge pull request #1575 from hajgato/hmmer_update
6123189 Merge pull request #1343 from rjeschmi/cufflinks1
1175175 Merge pull request #1551 from boegel/ABINIT_from_src
0f48dfa fix typo
5716833 fix typo
7142155 Merge pull request #1583 from boegel/WRF361_foss_2015a
050fa06 add custom sanity check paths for ABINIT
c67a9ec add custom sanity check paths for ABINIT
553df5b {chem}[intel/2015a] ABINIT 7.10.4
7739627 fix typo, remove unneeded configopts
d0e7de7 Merge branch 'develop' into WRF361_foss_2015a
b732ac5 Adding Tcl/Tk dependencies, modifying Java version and fixing version error in libpng
f735b8a Merge pull request #1648 from ULHPC/Cython
10be917 Fixing name resolutions
b2e3c06 Better use of variables
d443ee7 Merge pull request #1647 from ULHPC/Cufflinks
6915caa Adding R-3.2.0-ictce-7.3.5 and its dependencies
940200c Merge pull request #1646 from ULHPC/BEDTools
ea33e46 Adding Cython-0.22-goolf-1.4.10-Python-2.7.3.eb
d09ca49 Fixing source url
1494b93 Merge pull request #1645 from ULHPC/ABySS
c2c18d4 Fixing hardcoded version
ec54342 Adding Cufflinks-2.2.1-goolf-1.4.10
645c36b Merge pull request #1009 from tloizou/contrib_pBWA
440afe7 Modifying comments
df353b9 Comments modifications
c5a863a Adding BEDTools-2.23.0-goolf-1.4.10
7b694e0 Merge pull request #2 from boegel/contrib_pBWA
3b0eec5 Adding ABySS-1.5.2-goolf-1.4.10
0b7bf1c Adding QuantumESPRESSO-5.1.2-ictce-7.3.5
87a8597 style fixes in pBWA easyconfig
b89b0c7 Adding QuantumESPRESSO-5.1.2-ictce-7.3.5
92bf908 Merge pull request #1643 from ehiggs/hanythingondemand
a396d46 Add hanythingondemand eb files.
7bb6bee Merge pull request #1642 from JensTimmerman/gcc
4305537 Added GCC 4.6.0
84c0c09 added gcc 4.5.2
42ce784 Merge pull request #1641 from boegel/Geant4_1001p01
9ec1a46 add missing CMake build dep
680c670 Merge pull request #1639 from boegel/py2710_foss2015a
2ca85d3 Merge pull request #1638 from boegel/py2710
3882c4a {phys}[intel/2015a] Geant4 10.01.p01
8ec7779 fix remark
7d57230 fix remark
8ab6b2e extend sanity check for SQLite
bcdea02 extend sanity check for SQLite
f0b9ff6 Merge pull request #1637 from boegel/R_fpp
9a43d27 {lang}[foss/2015a] Python 2.7.10
ac6d71a {lang}[intel/2015a] Python 2.7.10
e1c84d9 include patch to build forecast with Intel compilers
e8f9ac3 Merge pull request #1634 from wpoely86/clang361
ac56b0d add fpp + deps as R extensions
2c91024 Merge pull request #1635 from boegel/GMP600a
739a81e Merge pull request #1636 from boegel/fastqc
0af5491 Change name of gmp version
6f3f4dc {bio}[dummy] fastqc 0.11.2 + 0.11.3
84c9837 fix GMP 6.0.0a with GCC/4.9.2
ae63f1c Update to Clang 3.6.1
94b7e11 Added simple easyconfig for recent Trinity based on MakeCp easyblock.
958c2c0 Merge pull request #1628 from boegel/Boost_Python_foss_2015_05
6a0daf1 Added easyconfig for up-to-date pandas.
b4bd9eb Merge pull request #1547 from jas02/GDAL_1.9.2_goolf_1.5.16
5390a67 Merge branch 'develop' into Boost_Python_foss_2015_05
8f3cb2c Merge pull request #1633 from sbridi/OpenFOAM_foss-2015.05
ec29cc6 a byte cleaner ;)
d00dfac Merge pull request #1621 from ehiggs/develop
a70c7d4 cleaned comments in flex-2.5.39-foss-2015.05.eb libreadline-6.3-foss-2015.05.eb ncurses-5.9-foss-2015.05.eb OpenFOAM-2.3.1-foss-2015.05.eb SCOTCH-6.0.4-foss-2015.05.eb
51d88ba Merge pull request #9 from boegel/ehiggs_develop
757910d adding missing libreadline,SCOTCH,ncurses,flex
d3d92f1 OpenFOAM foss 2015.05 flavour: needed for Centos6 on Haswell
b3cd1be Merge pull request #1629 from boegel/paycheck_py3
54ddbfb fix versionsuffix for extra R-bundle dep
14c3bea Merge pull request #1387 from boegel/R_extra
52bf9f7 fixed git to include EB perl and path
9cdee34 include deap v1.0.1 specific patch
3453e61 Merge pull request #1630 from wpoely86/charmm
1c264c2 move vegan/widgetTools extensions to R foss/2015a easyconfig
bed4ccd bump GViz version
50b099b bump KEGGprofile version
929ead9 bump GenomicFeatures version
4e5c422 bump rtracklayer version
27fb2e7 Merge pull request #1624 from boegel/SPIDER
2642b03 add patch for installing deap as Py3 extension
e3f7962 CHARMM for intel/2015a
9884eda fix mpi variant of SPIDER
2294aff fix remark
7962d2c add patch for installing paycheck as Py3 extension
5981713 SPIDER: update patch, use _mp Makefile for -mp/-mpi variants
f3ffb1a {*}[foss/2015.05] Python 2.7.9 + Boost 1.58.0 + deps
13fcc4c Merge pull request #1346 from wpoely86/potentialcanofworms
e6b4b18 fix remark
ed31db7 rename to R-bundle, move vegan/widgetTools extensions to R easyconfig
27d35e2 Merge pull request #8 from boegel/ehiggs_develop
9b892af Merge pull request #1626 from boegel/matplotlib143_python343
9880d63 rename to R-bundle, depend on -extra bundle
6b14a9e Merge pull request #1625 from boegel/FDS_r17534_r22681
acdd3c9 remove useless comment
65f9f76 {vis}[intel/2015a] matplotlib 1.4.3 (w/ Python 3.4.3)
ea5090f Merge branch 'develop' into R_extra
9519137 {phys}[intel/2015a] FDS r17534 + rr22681
0891d02 make FDS patch compatible with recent versions
a546581 add -mt and -mpi variants of SPIDER, extend patch
510e159 Merge pull request #1440 from rjeschmi/ruby-foss-fpm
b1b0d1e fix path in SPIDER patch
f2d25be {vis}[intel/2015a] SPIDER 22.10
da18a88 Merge pull request #1623 from boegel/R_TclTk
41b8444 Merge pull request #5 from boegel/ruby-foss-fpm
b78e23e include Tcl and Tk as dependencies in R foss/2015a easyconfig
4dad61c bump versions: Ruby 2.1.6 + latest extension versions
6a18ef8 Merge pull request #4 from boegel/ruby-foss-fpm
f6913e1 flesh out FPM into a dedicated easyconfig, sanity_check_paths were moved to Ruby easyblock
38ce9f6 all binutils-2.25 link statically with zlib
627201c statically link zlib in binutils
76f35e2 libtool was missing M4 dep
b6f710a add missing build dep for binutils in zlib
c0e1547 don't bother committing foss version (fixed)
46e6b83 Revert "don't bother committing foss version"
948fa64 include Tcl and Tk as dependencies in R easyconfig
4adef87 Merge pull request #23 from boegel/potentialcanofworms
2acb0ac add --with-sysroot=/ to all binutils easyconfigs
1910152 readd binutils easyconfig that was there already
6947b4a don't fiddle with existing GCC-4.9.2.eb easyconfig
afa60d2 Roll back the cURL version since 7.41.0 is parked in a WIP PR.
353afb9 Merge pull request #22 from boegel/potentialcanofworms
217d5da add foss/2015.05 easyconfig
0c792e5 Merge pull request #21 from boegel/potentialcanofworms
324627c add missing hwloc, also update HPL easyconfig for foss/2015.05
2f1000c Merge pull request #20 from boegel/potentialcanofworms
36303e1 add missing easyconfigs
9791ae7 Merge pull request #19 from boegel/potentialcanofworms
0ad26a6 update to OpenMPI 1.8.5 and OpenBLAS 0.2.14 (foss/2015.05)
6c6c63d WIP for R-bundles and devtools.
578ee20 Merge pull request #1622 from boegel/fixtypo
ca15317 fix typo
d1aa1ff Merge pull request #18 from boegel/potentialcanofworms
f0b8816 readd Tcl 8.6.4 that is required as a dep
f0bce6b Merge branch 'develop' into R_extra
becefcb use no-X11 Tk as dep in R-extra easyconfig
9f1645c use --with-sysroot=/ in binutils easyconfigs
206c5f6 remove libX11 dep from no-X11 Tk easyconfig
1009235 add Tk without X11 support
63c37d0 fix ScaLAPACK dep spec
53337ee rework foss/2015.01 by introducing GNU subtoolchain
1a5ac54 Merge pull request #1619 from boegel/frealign
c8bd301 Merge pull request #814 from JensTimmerman/fds
b2a2986 {vis}[intel/2015a] frealign 9.09
6f2b011 Merge pull request #21 from boegel/fds
41b4371 add missing 'easyblock' line
c52300e rename FDS patch file + style cleanup
0a9c19e Merge pull request #1617 from boegel/FDS
a6ab388 add easyconfig for binary version of FDS
c9e5090 Merge pull request #1616 from boegel/pypi_https
8da294a Merge pull request #1615 from boegel/eb211
86662e2 use PIPY_SOURCE as source URL where applicable
e079d27 consistently use https for PyPI URLs in homepage/source_urls
ff52953 use https source_urls in EasyBuild 2.1.1 easyconfig
d49bb8d {tools}[dummy] EasyBuild v2.1.1
b97ff1c don't bother committing foss version
ea7acab moving configopts to easyblock and updating other comments per PR comments
c823cad Adding R 3.2.0 with ictce 7.3.5
24863a4 fixing version in sanity checks
e2de9e4 Merge pull request #1614 from hpcugent/v2.1.x
a164a54 clearfy static linking zlib in binutils
462c15d static link with zlib in dummy binutils
e5acc42 Merge branch 'develop' into uni.lu
e271422 Merge branch 'v2.1.x' into develop
10afb8d Merge pull request #1612 from boegel/v2.1.x
15e6408 forgotten toolchains
2b9145a drop zlib dep in foss & gompi
d0f40cb Merge pull request #1613 from boegel/MrBayes
a04d50f {bio}[intel/2015a] MrBayes 3.2.5
b6f6d61 Merge pull request #959 from pescobar/cutadapt-1.4.1
24dd63a fix easyconfigs count
2baae95 includ PRs #1610 and #1611 in release notes
b4269fd include #1595, #1609 in v2.1.1 release notes
2e36448 bump version to 2.1.1 and update release notes
16f3527 Merge pull request #1610 from boegel/CrayGNU_5240
65f1038 Merge pull request #1611 from boegel/CrayGNU_5225
3965dfc add easyconfigs using CrayGNU/5.2.25 toolchain
2305326 add easyconfigs using CrayGNU/5.2.40 toolchain
181bd95 add easyconfigs using CrayGNU/5.2.25 toolchain
977a898 add easyconfigs using CrayGNU/5.2.40 toolchain
3f62c0c Merge pull request #1611 from boegel/CrayGNU_5225
16f6f0a Merge pull request #1610 from boegel/CrayGNU_5240
cddd0c9 add easyconfigs using CrayGNU/5.2.25 toolchain
19fdbbc update gcc to use binutils
b7279af Forgotten dependency
3fd381b update binutils to work with dummy
ad84890 add easyconfigs using CrayGNU/5.2.40 toolchain
fca31c5 clean up comments
4dc228d list tcsh as build dep in WRF built with CrayGNU, rather than providing it as a build dep
cd41abd Merge pull request #1595 from boegel/WRF_Cray
a872325 clean up comments
b460e22 Merge branch 'develop' into potentialcanofworms
4b1021a Merge pull request #1609 from boegel/Cray_dynamic
c367b61 Merge branch 'Cray_dynamic' into develop
adc659c Merge pull request #1609 from boegel/Cray_dynamic
114232d only use 'dynamic' toolchain option, not 'shared', in easyconfigs using Cray toolchain
d5d0490 enable usempi in GROMACS Cray easyconfig, the easyblock enables MPI support on it
c51c848 Merge pull request #1590 from boegel/Cray_GROMACS
68e844e Merge branch 'eb211' into v2.1.x
38d140e add version 5.2.40 of Cray toolchains + HPL as test case
04cb28e BLAST+ with foss 2015a
59a7685 bump subversion for deap extension, drop unnecessary patch
0c3fc06 include patch for deap extension in Python 3.4.3 easyconfig
709871a fix deap source template
7e8feed fix argparse source URL
7c5a920 bump extension versions in Python 3.4.3 easyconfig
ab0c00b added python 3.4.3 intel 2015a
2515a63 added python 3.4.1 with intel 2015a toolchain
b031cab fix OpenSSL 1.0.1m patch name
8e6841a {system}[intel/2015a] OpenSSL 1.0.1m
86dfb72 remove checksum, tarball is generated on the fly and checksum changes
76089b1 drop source_urls that are not guaranteed to work
b651008 add MD5sum for SaguaroGW source tarball
36704f8 {bio}[intel/2015a] SaguaroGW
b4d9eaf drop non-existing source URL, remove uncommented source tarball for regressiontests
58b1fc7 {bio}[intel/2015a] GROMACS 5.0.4 (mt, hybrid)
1d203c0 drop non-existing source URL, remove uncommented source tarball for regressiontests
516a5a5 Added forgotten Boost patch
ff98ab8 Added GROMACS 5.0.2
af2f8f3 Added Boost for ictce-7.1.2
6980c64 fix versionsuffix in Platanus easyconfig
93ce24c add easyconfig for Platanus (binary)
8ce753e add easyconfig for scikit-learn v0.16.1
3336fa6 add easyconfig for networkx
cb0e001 fixed remarks
380614a fixed filename
dad3b10 added even newer cutadapt
e59e7fc added new cutadapt for intel
38226e5 Adding HPL 2.1 with ictce-7.3.5
3de5c84 Adding the easyconfigs for ictce-7.3.5
c4571e5 Boost 1.58.0 for foss/2015a
55bd896 Boost 1.58 for intel/2015a
8eb13ee style fix
08bfd4b add easyconfig file for EasyBuild v2.1.0
f92c4e0 bump version to v2.1.x
6191620 Merge pull request #1607 from boegel/cray_5240
f1c2d8e add version 5.2.40 of Cray toolchains + HPL as test case
7d7ddb2 Fixing some indentation error
02ca634 Fixing indetation problem in an easyconfig
26717fa Merge pull request #1582 from hajgato/blast_foss
fa73027 Merge pull request #1602 from boegel/python343
556e7f3 bump subversion for deap extension, drop unnecessary patch
c8ab34d Merge branch 'develop' into R_extra
ecc4f23 Merge pull request #1601 from JensTimmerman/python341
e53a0c2 include patch for deap extension in Python 3.4.3 easyconfig
9c13853 Merge pull request #1603 from boegel/OpenSSL_101m
ac878e9 fix OpenSSL 1.0.1m patch name
9f7c0cc Merge pull request #1600 from boegel/SaguaroGW
8196de1 {system}[intel/2015a] OpenSSL 1.0.1m
f4b2695 fix deap source template
bfc9127 fix argparse source URL
b814e63 bump extension versions in Python 3.4.3 easyconfig
7c14eff remove checksum, tarball is generated on the fly and checksum changes
2ec310d added python 3.4.1 with intel 2015a toolchain
9b3e2a9 drop source_urls that are not guaranteed to work
d0e9e90 Merge pull request #1599 from boegel/GROMACS504_intel2015a
004eb26 drop non-existing source URL, remove uncommented source tarball for regressiontests
e593ad6 Merge pull request #1221 from wpoely86/gromacs-5
0c3e007 {bio}[intel/2015a] GROMACS 5.0.4 (mt, hybrid)
74d3f28 drop non-existing source URL, remove uncommented source tarball for regressiontests
3bce5c7 Added forgotten Boost patch
d87786a Added GROMACS 5.0.2
4a76afb Added Boost for ictce-7.1.2
d3e936a Merge pull request #1581 from boegel/eb210
fa44872 Merge pull request #1599 from boegel/GROMACS504_intel2015a
866e803 Merge pull request #1221 from wpoely86/gromacs-5
8a4c1d8 add MD5sum for SaguaroGW source tarball
038bff9 {bio}[intel/2015a] SaguaroGW
6d2d5a1 Merge pull request #17 from boegel/gromacs-5
d6c783a drop non-existing source URL, remove uncommented source tarball for regressiontests
f8578e3 drop non-existing source URL, remove uncommented source tarball for regressiontests
6efa275 {bio}[intel/2015a] GROMACS 5.0.4 (mt, hybrid)
5437a7b Merge pull request #1597 from boegel/Platanus
85fedfc added python 3.4.3 intel 2015a
a66a1e8 fix versionsuffix in Platanus easyconfig
ba29611 add easyconfig for Platanus (binary)
6fece15 added easyblock line
31932b9 Updated plumed
560459d Add Plumed easyconfig
76564b4 list tcsh as build dep in WRF built with CrayGNU, rather than providing it as a build dep
9ea3e45 Add Cufflinks-2.2.1-goolf-1.4.10.eb
8f324e2 Merge pull request #1593 from boegel/scikitlearn0161_intel2015a
21ae642 add easyconfig for scikit-learn v0.16.1
57f6283 Merge pull request #1592 from boegel/networkx
5ce61db Merge pull request #1033 from JensTimmerman/cutadapt
9bb6459 add easyconfig for networkx
955ec3e fixed remarks
c1a9960 fixed filename
c834c42 added even newer cutadapt
53d6db4 Merge branch 'cutadapt' of ssh://github.com/JensTimmerman/easybuild-easyconfigs into cutadapt
1b8ccef Merge pull request #1588 from ULHPC/PR-ictce-7.3.5
8ab052f style fix
b9f89c0 add easyconfig file for EasyBuild v2.1.0
633e688 enable usempi in GROMACS Cray easyconfig, the easyblock enables MPI support on it
91ae93d Adding oarsh specialisation for new impi
abee1f0 Adding HPL 2.1 with ictce-7.3.5
bb2c0a9 Merge pull request #1589 from wpoely86/boost1.58
3568cde Boost 1.58.0 for foss/2015a
26de6e3 Boost 1.58 for intel/2015a
f803935 License file path customization
cb01422 Merge branch 'PR-ictce-7.3.5' into uni.lu
b4c0852 Merge branch 'develop' into uni.lu
638cc7d Adding the easyconfigs for ictce-7.3.5
1cbd253 Correcting error in path for license files
64389a0 {geo}[foss/2015a] WRF 3.6.1
f7adb79 BLAST+ with foss 2015a
b15daa1 Merge pull request #1581 from boegel/eb210
bd4e4c8 style fix
0a603f9 add easyconfig file for EasyBuild v2.1.0
172dc89 bump version to v2.2.0dev
60b70cf Merge branch 'v2.1.x' into develop
6083773 Merge pull request #1579 from hpcugent/develop
80e714e bump version to v2.1.x
cd9b9e7 Merge pull request #1567 from boegel/eb210
8e69842 Adding oarsh connector specialization to OpenMPI where missing
1272d0e fix easyconfigs count
ccf5489 Merge pull request #1574 from geimer/cube_update
5da3932 include PR #1574 in release notes
d9c7561 Adding Cython 0.22
995c8f5 HMMER 3.1b2 with intel-2015a
454e95a dummy
16701dc Updating license configuration
0a8c2c2 Add comment that patches are no longer required for Cube 4.2.2 and up
2b2dcd9 include patch for Python 2.5.6 to fix issue with newer versions of 'svnversion' command that spits out 'Unversioned directory' rather than 'exported'
597d713 MPI specializations for oarsh
a67f2a8 Try to fix build issue by patching `configure` Provide updated easyconfig for Cube 4.3 (which should be used anyhow)
1b9d0be include link to EB@Cray wiki page
d8c294b Adjusted Scalasca URL
9276b84 Adjusted Cube download URL and tweaked build Requires https://github.com/hpcugent/easybuild-easyblocks/pull/552
d952c5b fix long line
3af0e7c fix date and counts in release notes
a0215ee Merge pull request #1558 from boegel/CrayGNU_5129
733cdb3 Merge pull request #1572 from boegel/R320_intel_foss_2015a
9ad88bc Merge pull request #1538 from pforai/cray_tc_configs
ae9df0b bump version of libpng in R 3.2.0 easyconfigs
f8ee2de Merge branch 'develop' into R320_intel_foss_2015a
f069709 Merge pull request #8 from boegel/cray_tc_configs
cf2b5fe enable retain_all_deps when resolving dependencies in easyconfig tests
2dfba5a fix toolchain in R easyconfig
58fc347 Merge pull request #7 from boegel/cray_tc_configs
3757554 also mention R v3.2.0
5e6be43 Merge pull request #1570 from pescobar/R-3.2.0-bare
faa0b44 {lang}[foss,intel/2015a] R 3.2.0 -bare
a4f01c8 Merge pull request #1571 from pescobar/java-1.7.80
31327ac bump java to 1.7.80
bc48592 added Java-1.7.0_80.eb
e8aa370 changed java version to latest in 1.7.x branch
d6b1c83 added NASM-2.11.06-goolf-1.7.20.eb
c5624f2 fix tests w.r.t. external modules and Cray toolchains
17301a2 R-3.2.0-goolf-1.7.20-bare.eb
4c44a3d include PR #1568
6ac72b5 Merge pull request #1568 from pescobar/bio-urls
9fbef00 Merge pull request #16 from boegel/bio-urls
e99e4f3 Merge branch 'develop' into bio-urls
0c37581 added 3.1.3 easyconfigs
8702642 updated urls for data and experiments data
b8d75d3 added http://www.bioconductor.org/packages/release/bioc/src/contrib/ as download url for bioconductor packages
91460c6 add easyconfig for WRF + deps with CrayGNU
78a2c85 Merge pull request #1566 from boegel/bundles
7cce6b4 bump version to 2.1.0 and update release notes
77df251 use proper Bundle easyblock for biodeps/PRACE
7ba7a92 Merge pull request #6 from boegel/cray_tc_configs
e902fa5 fix HPL patch + add description
0ec82f3 add HPL easyconfigs using Cray toolchains
2c72bf8 Merge pull request #5 from boegel/cray_tc_configs
dac9ed1 don't include cray-libsci as direct toolchain component
8e3af3a Adding ABySS 1.5.2
6d0632f Merge pull request #1536 from ehiggs/ipython
d00872e Merge pull request #7 from boegel/ipython
77d9f56 minor style fixes
82eeec1 Merge pull request #6 from boegel/ipython
a49ebcb bump to latest versions (IPython 3.1.0), add Pygments dep for IPython
08462a2 Merge branch 'develop' into ipython
fdef036 Adding new SAMtools versions
579f2e4 Adding TopHat 2.0.14
b20a975 Merge pull request #4 from boegel/cray_tc_configs
c83c8a1 load cray-libsci versionless
77e1145 Merge pull request #3 from boegel/cray_tc_configs
8dc68fa Merge pull request #1553 from wpoely86/gcc5
981ae91 Only build a ISL enabled version of GCC
85412af Merge pull request #1564 from jas02/OpenCV-2.4.9-intel-2014.06
fa38bc6 Updated version suffix
90f959d5 Add GCC with ISL and 3 stage build
c3296f6 Update GCC easyconfig
9dc69b1 Merge pull request #1563 from boegel/Octave_intel
9f8ec02 style fix in Octave easyconfigs
f70f25d Merge pull request #1 from boegel/OpenCV-2.4.9-intel-2014.06
3a22caa sync with easyconfigs in develop where needed
495f273 Updated checksum
2d387c0 OpenCV-2.4.9-intel-2014.06 anddependencies
c0f36ba add missing libreadline easyconfig with CrayGNU 5.1.29
fd0f971 add missing bzip2 easyconfig with CrayGNU 5.1.29
3ad51d6 add easyconfigs for Python/numpy/scipy with CrayGNU 5.1.29
5e877df complete patch for building Octave with Intel
9281c89 fix patch for building Octave with Intel compilers, add sanity check command
4e6b0a2 {math}[intel/2015a] Octave 3.8.2
828c2d3 Merge pull request #1562 from boegel/expat_fPIC
17c41d9 Merge pull request #1366 from hpcleuven/feature/fftw
361bf2f Merge pull request #10 from boegel/feature/fftw
b99801a fix sources/source_urls in Octave easyconfig
05e3d12 add easyconfigs for CP2K + deps with CrayGNU/5.1.29
d25a7fd Merge pull request #9 from boegel/feature/fftw
5229f7d Merge branch 'develop' into feature/fftw
f141b44 Merge branch 'uni.lu' of github.com:ULHPC/easybuild-easyconfigs into uni.lu
f71766f Added config for the newest version of EMBOSS without any dependencies.
ba09363 enable pic option in expat easyconfigs
cf377e9 include PrgEnv and cray-libsci deps in CrayGNU toolchains
8d97c96 Updating ABAQUS easyconfigs
539d63d Fixing ABAQUS-6.14.2 easyconfig
70a3528 Merge pull request #1561 from jas02/toolchain_intel-2014.06
3adbc13 Toolchain intel-2014.06 including HPL-2.1
511854d remove GROMACS 4.6.5 with CrayGNU
856d361 Merge branch 'CrayGNU_5129' of github.com:boegel/easybuild-easyconfigs into CrayGNU_5129
29f0541 add easyconfig for GROMACS + ncurses/CMake deps with CrayGNU 5.1.29
3e14201 Merge pull request #5 from pforai/craygnu_gromacs
2528867 Added initial GROMACS 4.6.5 support for CrayGNU. Need to add -mt and -hybrid suffixes.
c44b552 Merge pull request #1560 from boegel/parallel20150322
3430ac8 bump Perl version in parallel dep to latest
8b46e66 {tools}[GCC/4.9.2] parallel 20150322
40bb88d Merge pull request #2 from boegel/cray_tc_configs
485182e specify fftw dep in Cray toolchain easyconfigs as an external dep
451c045 Merge pull request #1518 from boegel/gmsh_getdp
cd71dfb add easyconfig for Libint 1.1.4 with CrayGNU 5.1.29 toolchain
0d53fd7 add working easyconfigs for HPL, zlib, Szip with CrayGNU 5.1.29 toolchain
7b6b300 fix sanity check paths for getdp
fcb0286 fix getdp easyconfig filename
549ec8a Merge pull request #1517 from boegel/PETSc_SLEPc_353_intel2015a
1c92a91 Merge pull request #1557 from pescobar/mathematica
1f90d26 Merge pull request #15 from boegel/mathematica
4255429 add CMake as build dep to getdp/gmsh easyconfigs
73ead9e use %(version)s template
5c18bb7 fix remarks
288967c include petsc_arch spec in SLEPc 3.5.3 easyconfig
4e0e666 Merge pull request #1554 from ehiggs/spark
f969673 Merge branch 'spark' of https://github.com/ehiggs/easybuild-easyconfigs into spark
4bd6b21 Fix sources.
f4a106f Merge pull request #5 from boegel/spark
4359a86 collapse deps
9c618b5 Update java dep version.
e70bb28 Remove check of bin dir since we check a file in bin anyway.
f4f580a Merge pull request #1 from boegel/cray_tc_configs
bd259ad include fftw dep in Cray toolchains
12a946e Added BEDTools 2.23.0 with goolf toolchain.
8fbae10 Updated easyconfigs for BWA and picard. Added easyconfig for FastQC.
404cce4 added easyconfig for newer mathematica versions
2aa2adf Support Spark 1.3.0
1c16a61 Updating customization branch
66f801a Updating customization branch
9fd5c72 First try at GCC 5.1
0ee4ead Merge pull request #1537 from boegel/fix_mklroot
f3d8191 Merge pull request #1550 from boegel/FSL508_intel2015a
7855d8b add another missing patch file for FSL
70f461a {chem}[intel/2015a] ABINIT 7.11.6 + libxc 2.2.2 (WIP)
cd613e2 Merge pull request #1549 from boegel/pymatgen
a60258f Merge pull request #1548 from boegel/monty
a18dadc add missing patch file for FSL
ac4f675 {bio}[intel/2015a] FSL 5.0.8 + deps (REVIEW)
9f2d54c {chem}[intel/2015a] pymatgen 3.0.13 + spglib 1.7.3 (REVIEW)
81a2023 fix remark
b5a1b36 add easyconfigs for monty 0.6.4 and latest dev version by @gmatteo
568961d Merge pull request #1544 from boegel/h5py_250
c72cd83 fix remar
3dd94d9 Merge pull request #1130 from boegel/WIEN2k_14.1
838b269 Added GDAL-1.9.2-goolf-1.5.16 and zlib-1.2.8 dependency
57fee77 Merge pull request #1546 from boegel/grace_5123_intel2015a
2e2e8ef Merge pull request #1545 from boegel/numpy192_scipy0151
7b704a4 Merge pull request #1543 from jas02/toolchain_goolf_1.5.16
e37e42a add easyconfigs for WIEN2k 14.1 and 14.2 with intel/2015a
ee6196e {vis}[intel/2015a] grace 5.1.23 (REVIEW)
5a88115 {math}[intel/2015a] numpy 1.9.2 + scipy 0.15.1 (REVIEW)
68012ca {data}[intel/2015a] h5py 2.5.0 (REVIEW)
e9df861 Merge pull request #1541 from boegel/python_meep_142
34f211d Merge pull request #1540 from boegel/Py279_pandas
597d8d8 Added HPL-2.0-goolf-1.5.16.eb
026f640 goolf-1.5.16 moved to the right directory
589908c easyconfigs moved to the right directories
6bcfeee Added goolf-1.5.16
265f11d Added ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0
917b150 Added FFTW-3.3.4-gompi-1.5.16
3b3cab1 Added OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0
1ec86e9 Added LAPACK-3.5.0-gompi-1.5.16.eb
359a12c fix remark, bump libreadline in guile easyconfig to 6.3
f0c8dcf add pandas extension to Python 2.7.9 easyconfigs
6c00f9f stick to SWIG 2.x for pyhton-meep
97a4517 Merge pull request #1539 from boegel/pyhull
42a68f8 fix patch for Meep v1.3
624f287 add easyconfig for python-meep 1.4.2 on top of Python/2.7.9 and Meep/1.3
7e51eec SWIG is build dependency for python-meep, style fixes in Meep easyconfigs
0f709b5 add easyconfig (and patch) for pyhull + Qhull with intel/2015a, set $CPATH correctly in existing Qhull easyconfigs
5c3dfc1 Merge pull request #1532 from boegel/no_more_root
6b0e380 Addressed remarks.
719a4f8 Added Cray Toolchain Configs.
4f90d7a fix indent
b6a99c2 stop relying on $MKLROOT in ROOT easyconfigs
0577c33 Merge pull request #1534 from JensTimmerman/pyyaml
1c9bf47 Update PyYAML-3.11-intel-2015a-Python-2.7.9.eb
42afd7c Rename libyaml-0.1.4-intel-2015a.eb to libyaml-0.1.6-intel-2015a.eb
1ef7de7 Update libyaml-0.1.4-intel-2015a.eb
5a631dd WIP support for IPython.
4cd2ead Support IPython 3.0.
5a8f25c added forgotten libyaml
1eb6cd6 added new PyYAML with intel 2015a
4765050 replace use of $root with %(installdir)s
317ae41 Merge pull request #1531 from JensTimmerman/pandas
42777cf fixed filename
e77b572 added some pandas
a297788 adding fpm to the dummy Ruby install
4d79e12 Merge pull request #1530 from ehiggs/hanythingondemand
f2af436 Bump vsc-base version.
9dc9159 Merge pull request #1528 from boegel/motif234_libX11163
b7aebb9 Bump hod and vsc-base for bug fixes.
c5cb705 use most recent pbs_python, use VersionIndependentPythonPackage for HOD
ebbacfb bump vsc-base to v2.0.4
ab061e0 fix source URLs for netaddr and netifaces
ba2fd41 bump netaddr to 0.7.14
7e44e4a Add moduleclass to the .eb files.
34c9845 Add vsc-mympirun and vsc-base files for hanythingondemand.
3ec8c9a Add patches!
e583419 Add pbs_python since it wasn't in EB upstream.
243d569 Support for hanythingondemand.
7bbe28c enable lowopt for motif with intel/2015a to dance around compiler segfault
90f82fc include Autotools as build dep, rather than only libtool
eccd8d3 {vis}[intel/2015a] motif 2.3.4 with libX11 1.6.3 (REVIEW)
4c5bfbb Merge pull request #1527 from boegel/Bison304
8d3c2ac Merge pull request #1526 from boegel/utillinux2261
dc686d0 include --without-python in util-linux easyconfig
4bcbacf {tools}[intel/2015a] util-linux 2.26.1 (REVIEW)
8dd30b3 add easyconfig for Bison v3.0.4
f81715e Merge pull request #1524 from JensTimmerman/seqtk
5986257 Update seqtk-sgdp-intel-2015a.eb
65c508d Update seqtk-sgdp-intel-2015a.eb
368a89a Update seqtk-sgdp-intel-2015a.eb
eb47e55 added seqtk
759f63c Merge pull request #1369 from hpcleuven/feature/utils
b94027e Merge pull request #8 from boegel/feature/utils
7107eab use bare Python as a build dep for GLib
7e47fb8 Merge pull request #7 from rjeschmi/hpcleuven-utils
d31e276 add easyconfig for extra R extensions that require additional dependencies
ff7aa39 Merge pull request #1521 from boegel/AFNI_PyQt_SIP_intel2015a
7564e13 Merge branch 'develop' into R_extra
50f6b45 add easyconfigs for AFNI, PyQt and SIP with intel/2015a
3ba4692 adding ncurses dep
c3123e1 Merge pull request #6 from boegel/feature/utils
1359b21 fix source_urls for libevent
a1cfe93 Merge pull request #5 from boegel/feature/utils
8275b0d include pkg-config as build dep for mc
71c11b9 Merge pull request #4 from boegel/feature/utils
145d67f Merge branch 'develop' into feature/utils
c53159e adding a couple of dummy versions
f2e33e6 Merge pull request #1322 from boegel/AFNI
d302c11 Merge branch 'develop' into AFNI
94b31ba add easyconfigs for gmsh and getdp
bb78d65 add missing sympy/numpy easyconfigs
e67c6f6 reinclude FIAT and ScientificPython (that depends on an older numpy) as PETSc deps
fa3daa6 Merge pull request #1516 from boegel/ABAQUS6135
08fe8cc fix remark w.r.t. versionsuffix for ABAQUS, sync ABAQUS easyconfigs w.r.t. Java builddep and preinstallopts
8031b31 add easyconfig for ABAQUS v6.13.5
27c890c Merge pull request #1515 from boegel/BEDTools_2230_intel2015a
93eb340 README.md -> README.rst for old BEDTools versions
e91b085 only include 'tutorial' for latest BEDTools version, drop RELEASE_HISTORY (not updated)
2e566d1 {numlib}[intel/2015a] PETSc/SLEPc 3.5.3
a01b731 README -> README.md
0944a45 enhance files_to_copy in BEDTools easyconfigs
86c640d {bio}[intel/2015a] BEDTools 2.23.0
e398424 Merge pull request #1344 from boegel/Tcl_zlib
7259dec add zlib dep to Tcl 8.6.3 easyconfigs
2961c78 get rid of LDSHARED line in zlib easyconfig
db9cc8d Merge branch 'develop' into Tcl_zlib
cfaf7f1 Merge pull request #1513 from boegel/lxml342_intel2015a
caf3a4c style fix
643b4b9 add easyconfig for lxml v3.4.2 with intel/2015a
a993f1c Merge pull request #1511 from boegel/OpenMPI_verbs
0e280f4 Merge pull request #1507 from boegel/py_iqacml_six_ecdsa
65d0a7d Merge pull request #1510 from boegel/py278_six_ecdsa
f4415ff Merge pull request #1505 from boegel/py273_g-olf_six_ecdsa
dc850c3 Merge pull request #1506 from boegel/py273_intel_six_ecdsa
eeb7bed Merge pull request #1509 from boegel/py276_six_ecdsa
2d33abe Merge pull request #1508 from boegel/py275_six_ecdsa
9e8b746 Merge pull request #1512 from boegel/OpenMPI_osdeps
8e6ee42 Merge pull request #1504 from boegel/py273_cg-olfsix_ecdsa
97a827c Merge pull request #1493 from boegel/GATE62_intel2015a
02c7720 fix osdeps spec in OpenMPI easyconfigs, stop relying on OS_NAME
4144a30 use --with-verbs rather than the deprecated --with-openib for OpenMPI
32a8a47 add six/ecdsa as dep for dateutil/paramiko in Python 2.7.3 easyconfigs with Intel-based toolchain
d6ba5ac add six/ecdsa as dep for dateutil/paramiko in Python 2.7.3 g*olf easyconfigs
289c2bc add six/ecdsa as dep for dateutil/paramiko in Python 2.7.3 cg*olf easyconfigs
c0a2565 add six/ecdsa as dep for dateutil/paramiko in Python 2.7.6 easyconfigs
afc77b3 add six/ecdsa as dep for dateutil/paramiko in Python 2.7.5 easyconfigs
39635a4 add six/ecdsa as dep for dateutil/paramiko in Python easyconfigs using iqacml toolchain
9e27023 add six/ecdsa as dep for dateutil/paramiko in Python 2.7.8 and 3.4.1 easyconfigs
cc68b6b add six/ecdsa as dep for dateutil/paramiko in Python 2.7.3 intel/2015a easyconfig
64868df Merge pull request #1036 from pescobar/pigz
ad01913 include required patch for GATE v6.2 with intel/2015a
447ec6e Merge branch 'develop' into GATE62_intel2015a
faae20b Merge pull request #14 from boegel/pigz
1f4ab43 makeopts -> buildopts
5baa9ad fix spacing in PyQt easyconfig
1ebe2b1 fix typo in PyQt easyconfig
6e3e817 fix ROOT patch file
d35bee6 fix PyQt source_urls, configopts, Py module name
7410b00 use enhanced patch file for ROOT v5.34.01 with intel/2015a
1b27f67 Merge pull request #1502 from boegel/Minimac3
7acc7f3 Merge pull request #1489 from JensTimmerman/xmipp
b769000 Merge branch 'develop' into GATE62_intel2015a
30422dd Merge pull request #815 from pescobar/Minimac
6166f68 Merge pull request #20 from boegel/xmipp
31ec437 add easyconfigs for Minimac3
1dcc0fb add missing SQLite dependency
5077d94 Merge pull request #13 from boegel/Minimac
c3c3e93 fix Minimac 'version'
1f15959 Java is a dummy dep
83ffaa1 add missing Java dep for Xmipp
014c825 add http download URL for LibTIFF
07c8e30 bump Xmipp deps to latest version
b87d628 bump libXp version
7ee6fcb Merge branch 'develop' into AFNI
97e53e0 Merge pull request #1497 from boegel/R313_intel2015a
00d31a4 Merge pull request #1496 from tmwsiy2012/develop
b9ef0ba Merge pull request #1323 from boegel/libXp102_intel2015a
97625ea Merge pull request #1321 from boegel/libXp102_goolf1514
2542456 first draft for R-3.1.3-foss-2015a.eb
61966ba drop unrequired patch file for libxcb
bd9a19c fix remarks
5a072e8 bump libXp to v1.0.3 + update deps
774c95f fix remarks
aeba82b bump version of AnnotationDbi
c0b7ca3 add missing libX11 easyconfig
953b574 bump libXp to v1.0.3 + update deps
e2863a4 Merge branch 'develop' into libXp102_intel2015a
f1ddb0c Merge pull request #1339 from hpcleuven/feature/tk
6804238 GLPK 4.55 intel-foss 2015a
df014f2 fix tiny remark
1b1d525 Dummy
7f53b3f add easyconfig for R v3.1.3 with intel/2015a
e72e6b2 Merge pull request #1 from boegel/tmwsiy2012_develop
2c0dc0f fix inter-pkg deps for R v3.1.3
c298ff5 bump all extensions to latest version in R 3.1.3 foss/2015a easyconfig
018a175 first draft for R-3.1.3-foss-2015a.eb
4c1dc03 added checksum. switch to buildopts. fixed error
06f14dd Merge pull request #1492 from hajgato/bcf_n_samtools
55d5d7d Filename corrected
00d81f1 Typos corrected
7767b36 zlib added, filenames corrected
f094eec Merge pull request #1491 from hajgato/htslib
3356cfc Merge pull request #1494 from boegel/Ray231
9058553 Applying fixes for 2.0 (Deprecated functionalities)
2b2e7cb add easyconfig for Ray v2.3.1
fbb18c4 SAM and BCFtools with intel and foss 2015a
c3492dd CMake is a build dep
181669e bump zlib dep to 1.2.8 in deps of Python/libxml intel/2015a easyconfigs
c04ba25 remove unrequired patch from Python 2.7.3 intel/2015a easyconfig
f1c1df1 dummy2
3107751 add easyconfigs for GATE v6.2 with intel/2015a + deps
7f9c5cf dummy
c07de66 HTSLib intel,foss 2015a
4abd1c8 dummy
d8d53ce Merge pull request #1488 from ehiggs/hadoop-2.5
6b7985a Hadoop has a buggy parallel build so only use 1 thread.
b5dc778 ULHPC customizations (made during RESIF dev)
38690c3 Minor changes based on boegel's feedback.
7aeb384 added clarification about really needing sqlite in python
438b998 removed todo's
eaefa10 cleaned up xmipp easyconfig, added patches
32d311e Add version suffix of '-native'.
193d817 Merge pull request #1487 from boegel/OpenFOAM231_patch_fix
f84701c Add Hadoop-2.5.0-cdh5.3.1 and patch them.
486a124 added initial Xmipp easyconfig
9f4ca3f clean up OpenFOAM patch, don't patch symlink lnInclude/ptscotchDecomp.C
fd3fc05 Merge pull request #1486 from boegel/OpenFOAM231
d35f2df add comments in OpenFOAM patch files
381a35c add easyconfig for OpenFOAM 2.3.1 with intel/2015a
1cc2e99 Merge pull request #1485 from boegel/SCOTCH_homepage
b3a37fd fix SCOTCH homepage
6069b32 Merge pull request #1463 from hajgato/mathplotlib
58b717d Merge pull request #1462 from hajgato/python_update
aed905a Merge pull request #978 from jordiblasco/Chapel-1.9.0
8b31ede implicit zlib dep removed
a4c38e9 python deps moved to python, qhull patch renamed
0074628 Version update of pbr plus mock and pytz packages
239a018 added missing bzip2 dependency
07d0e0b style fixes boost easyconfig
f42eb31 dropped empty line boost easyconfig
6117848 move parallel=1 above sanity check
3ba64da four spaces indent
40f62be dropped empty line zlib easyconfig
77e8d2d Merge pull request #1484 from pescobar/zlib-goolf-1.7.20
318f1e8 added zlib easyconfig for goolf-1.7.20
1c8dd2e mutect easyconfig
2f8b6e3 style fixes zlib easyconfig
44caa0a switched to used boost without python
0c2ba7e added zlib dependency
ebab3de added boost dependency
e7f948c tophat-2.0.13 and patch
1c31cbf Merge pull request #1474 from boegel/blast+
8d35d7a Merge pull request #1471 from ocaisa/master
4570f47 one patch suffices to fix basename issue
5577189 Merge pull request #1472 from boegel/FLUENT160
084f631 Merge pull request #1468 from JensTimmerman/python_sqlite
80fdd93 Update libxc-2.2.1-intel-para-2014.12.eb
8fcdb64 Update CP2K-2.6.0-intel-para-2014.12.eb
6a79db9 prefer http over ftp
8e63529 Merge pull request #1470 from boegel/LD_PRELOAD_Hoard_jemalloc
5e8258f Update CP2K-2.6.0-intel-para-2014.12.eb
9bf1062 Update M4-1.4.17-intel-para-2014.12.eb
fad7ba2 moved new BLAST versions to BLAST+
28fa7c8 Merge branch 'blast_2.2.30' of github.com:hajgato/easybuild-easyconfigs into blast+
8871c65 Merge pull request #1 from ocaisa/patch-1
36a4972 Update Libint-1.1.4-intel-para-2014.12.eb
91fe398 Update flex-2.5.39-intel-para-2014.12.eb
30759cd Update Bison-3.0.2-intel-para-2014.12.eb
5efac5d Update and rename Bison-3.0.2-intel-2014.12.eb to Bison-3.0.2-intel-para-2014.12.eb
fb27805 fix FLUENT homepage
8b34e00 add easyconfig for FLUENT 16.0
195a61c Merge pull request #1467 from boegel/UFL
1e980b0 Create M4-1.4.17-intel-para-2014.12.eb
fe2aa32 Create Bison-3.0.2-intel-2014.12.eb
ed12272 Create flex-2.5.39-intel-para-2014.12.eb
f54da75 Update libxc-2.0.2-ictce-5.3.0.eb
967ca07 Create libxc-2.2.1-intel-para-2014.12.eb
90af247 Create Libint-1.1.4-intel-para-2014.12.eb
83b1a26 include setting of LD_PRELOAD in Haord/jemalloc easyconfigs
53f6428 Use toolchain in repo
3ff2f80 Create CP2K-2.6.0-intel-para-2014.11.eb
04c5730 added more dependencies (tcl)
f798054 fixed typo
71de145 added more dependencies
99d31ad removed unwanted ropeproject folder
2cb09b0 added sqlite as dependency for python 2.7.9
e956fc2 Merge branch 'feature/python_sqlite' of github.com:hpcleuven/easybuild-easyconfigs into python_sqlite
5627067 fix typo: bdist -> blist
ff73044 add missing extensions in Python 2.7.8 goolf/1.5.14 easyconfig
d26396a Merge pull request #1465 from boegel/TINKER
4f5a6c0 add FFTW dep to TINKER easyconfig
3890f73 add easyconfig file for TINKER v7.1.2 with intel/2015a
a45381b Merge pull request #1458 from pescobar/blast_2.2.30
5d764c5 Merge pull request #1464 from boegel/Boost_157_goolf1410
3c68831 {devel}[goolf/1.4.10] Boost 1.57.0 (REVIEW)
17886b6 Merge pull request #1460 from hajgato/beagle-lib-r1261
d906ad3 Deps moved from another PR (plus some extra)
954367d bump to boost-1.57.0
95fea92 Matplotlib 1.4.3-Python-2.7.9 with deps
145a8d3 dummy
2f3137a Lockfile needs pbr
c29deae Merge pull request #1459 from hajgato/metis-foss5a
9b40a09 Merge pull request #1244 from JensTimmerman/gtest
1c37e81 remove more whitespace
1a634da remove whitespace
267de71 beagle-lib 20141202 aka r1261 with intel-2015a
be57691 Dummy
55c7f0c METIS 5.1.0 with foss-2015a
0315cb7 Dummy
bcc8d99 Merge branch 'develop' of github.com:hpcugent/easybuild-easyconfigs into develop
743278b Merge pull request #1434 from wpoely86/GDB7.9
a19b1f5 Fix typo
aae9e84 Extend comments in patch
87ffeb2 switched to http download url
393442a added comment about the patch
4996487 Final fix? for missing makeinfo
21c21fb changed patch name updated easyconfig
8d70280 updated patch comment
8052b79 added comment to patch file
135e87c Another try for makeinfo
687239d Disable makeinfo for GDB
6a68472 added easyblock=configuremake
c4aef62 moved easyconfigs to BLAST+ folder
7ea5926 blast+ 2.2.30 and patch
6f76848 reorder dependencies to work with local only gem installer
720160c missed childprocess dep
52eed5d adding dependency gems
c3c8683 moving fpm to bundle separate from the base ruby install
d6df555 adding the foss-2015a with fpm easyconfig
6717d0a Merge branch 'develop' into gnuplot5
c386718 Merge pull request #1438 from wpoely86/h5py
5eb6285 Merge pull request #1455 from boegel/eb_200
c554949 bump vsc-base dep for v2.0.4
1417385 Merge branch 'develop' of github.com:hpcugent/easybuild-easyconfigs into develop
1214db6 bump version to v2.1.0dev
90bad36 Merge pull request #1454 from boegel/eb_1162
ddc292b Merge pull request #1457 from hpcugent/develop
a6faf56 Merge pull request #1453 from boegel/eb20
8de1f82 Merge branch 'master' into eb20
37c0e6d Merge pull request #1456 from boegel/master
fc1a90a bump version to v1.16.2.0, update release notes
28fcb4c add easyconfig file for EasyBuild v2.0.0
ae204ec add easyconfig file for EasyBuild v1.16.2
03bb950 Merge branch 'develop' into eb20
eb05dd7 Merge pull request #1452 from boegel/fix_sparsehash_name
3a81d45 minor fixes in release notes
dec0b64 fix filenames for sparsehash easyconfigs
4395afe fix 'sources' spec in sparsehash easyconfigs
f0d4a80 Merge pull request #1451 from boegel/bugfix_hpcbios_bundles
ca5240c fix name of sparsehash dep in ABySS easyconfig
e788170 include #1452 in release notes
7243320 actually, the correct name is 'sparsehash'...
52c1630 fix name in google-sparsehash easyconfig
273c9e6 fix moduleclass in HPCBIOS easyconfigs
77903fd bump to v2.0.0 + update release notes
76a6b06 fix name of google-sparsehash easyconfig
862696e use new 'bundle' moduleclass for bundles
fe2f007 Merge branch 'develop' into bugfix_hpcbios_bundles
59f6810 Merge pull request #1389 from wpoely86/clang36
d3ea84d Merge pull request #1443 from pescobar/blast-name-fix
ae95523 Added libxml as build dep to Clang
fc9be42 removed 2.2.30
49651fa Merge pull request #1406 from boegel/GAMESSUS_20141205R1_intel2015a
99510e9 Merge pull request #1153 from boegel/gamess-us
de9694f changed to BITBUCKET_SOURCE per note by @wpoely86
9c77ebf Merge pull request #1431 from wpoely86/psi4-git
7f660ea cleanup
613f5f2 added BLAST+ folder
643ba99 Merge pull request #1448 from boegel/fix_Bison_screwup
b196f6c Added missing python build dep to Clang
ad3099d Merge pull request #1449 from boegel/ORCA-3.0.2
85c2daf correct filename for ORCA v3.0.0
aa2cb94 Sanity check for Clang is in the easyblock
d52299d Merge pull request #1447 from boegel/fix_conflict_detection
3bb7963 fix version for ORCA 3.0.0 easyconfig
4094b88 fix Bison build dep in MVAPICH2 easyconfig
b718b12 fixed dependencies in other easyconfigs
de0c1d6 removed unneded patch for BLAST+-2.2.30-goolf-1.4.10.eb
3e57469 fix conflict detection by considering build deps separately from runtime deps
8259392 Merge pull request #1441 from scintimandrion/ORCA-3.0.3
41a0c87 include comments in patches for GAMESS-US
0124583 XML::Twig for goolf 1.4.10
e192d64 disable running of tests for GAMESS-US on top of goolf/OpenMPI
c5636a4 renamed blast easyconfigs
ee01248 New Easyconfig for ORCA 3.0.3
c1f412d Merge pull request #1430 from boegel/parallel
853959c exclude Perl as dep for parallel built with ictce/4.0.6
9439cf9 Merge pull request #1437 from boegel/OpenFOAM_222
25dc618 h5py: correct versionsuffix
37651f5 Change sanity check to test for egg
6d05d31 Add version suffix to h5py
e45477e Non-MPI build of h5py
043f333 New version of h5py
00941ca Fix patch
92f94eb Fix perl path
b21a842 fix remark, bump SCOTCH version to 6.0.3
05c3701 Added perl as build dep to PSI
6ac577e add SCOTCH easyconfig as dep for OpenFOAM
146ed59 add easyconfig with OpenFOAM 2.2.2 + required patches
e1a8b87 enhance patches for recent GCC + OpenBLAS
e113a62 add required patch files for GAMESS-US goolf easyconfig
ab9178a Merge pull request #1413 from rjeschmi/samtools1.2
e6bb9ef Version of Python easyconfig…
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MUSCLE easyblock