From 5c3676230e01d3522d9ed36ee4ce01a3ab18cf11 Mon Sep 17 00:00:00 2001
From: Pavel Tomanek <shavel.tom@gmail.com>
Date: Mon, 20 May 2024 11:53:15 +0200
Subject: [PATCH 1/2] adding easyconfigs: atropos-1.1.32-gompi-2023a.eb

---
 .../a/atropos/atropos-1.1.32-gompi-2023a.eb   | 59 +++++++++++++++++++
 1 file changed, 59 insertions(+)
 create mode 100644 easybuild/easyconfigs/a/atropos/atropos-1.1.32-gompi-2023a.eb

diff --git a/easybuild/easyconfigs/a/atropos/atropos-1.1.32-gompi-2023a.eb b/easybuild/easyconfigs/a/atropos/atropos-1.1.32-gompi-2023a.eb
new file mode 100644
index 000000000000..4f407de01400
--- /dev/null
+++ b/easybuild/easyconfigs/a/atropos/atropos-1.1.32-gompi-2023a.eb
@@ -0,0 +1,59 @@
+easyblock = 'PythonBundle'
+
+name = 'atropos'
+version = '1.1.32'
+
+homepage = 'https://atropos.readthedocs.io'
+description = "Atropos is tool for specific, sensitive, and speedy trimming of NGS reads."
+
+toolchain = {'name': 'gompi', 'version': '2023a'}
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('Python-bundle-PyPI', '2023.06'),
+    ('tqdm', '4.66.1'),
+    ('Pysam', '0.22.0'),
+    ('pytest', '7.4.2'),
+    ('SRA-Toolkit', '3.0.10'),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+exts_list = [
+    ('versioneer', '0.29', {
+        'checksums': ['5ab283b9857211d61b53318b7c792cf68e798e765ee17c27ade9f6c924235731'],
+    }),
+    ('screed', '1.1.3', {
+        'checksums': ['37e81697c7dba95a053554e5b5a86aff329705e1cf5dfc5e7b8da586dee072b8'],
+    }),
+    ('bz2file', '0.98', {
+        'checksums': ['64c1f811e31556ba9931953c8ec7b397488726c63e09a4c67004f43bdd28da88'],
+    }),
+    ('khmer', '2.1.1', {
+        'checksums': ['a709606910bb8679bd8525e9d2bf6d1421996272e343b54cc18090feb2fdbe24'],
+    }),
+    ('pokrok', '0.2.0', {
+        'checksums': ['cfe7956602d8bbc142a07bcb259e0d1d939f96d7b074e00dceea3cb5e39244e8'],
+    }),
+    ('xphyle', '4.0.5', {
+        'checksums': ['b744723a3c88d81318c7291c32682b8715a046f70d0a1db729bda783fd5e08bd'],
+    }),
+    ('srastream', '0.1.3', {
+        'checksums': ['7f2cfd76ae988349ad5407a952cd4c133ae5dff7cf12c76072c53d82b50c2634'],
+    }),
+    (name, version, {
+        'checksums': ['17e9dc3d76d7a2ca607a12da191a6d7ba1cfbd1a8c924215870417f85858fd83'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/atropos'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = ["atropos detect --help"]
+
+sanity_pip_check = True
+
+moduleclass = 'bio'

From 4feb43ef23e5098f1b76c9a5e695eee699660d67 Mon Sep 17 00:00:00 2001
From: Pavel Tomanek <shavel.tom@gmail.com>
Date: Mon, 20 May 2024 13:22:31 +0200
Subject: [PATCH 2/2] fix sanity_pip_check

---
 easybuild/easyconfigs/a/atropos/atropos-1.1.32-gompi-2023a.eb | 2 --
 1 file changed, 2 deletions(-)

diff --git a/easybuild/easyconfigs/a/atropos/atropos-1.1.32-gompi-2023a.eb b/easybuild/easyconfigs/a/atropos/atropos-1.1.32-gompi-2023a.eb
index 4f407de01400..dddac86e727e 100644
--- a/easybuild/easyconfigs/a/atropos/atropos-1.1.32-gompi-2023a.eb
+++ b/easybuild/easyconfigs/a/atropos/atropos-1.1.32-gompi-2023a.eb
@@ -54,6 +54,4 @@ sanity_check_paths = {
 
 sanity_check_commands = ["atropos detect --help"]
 
-sanity_pip_check = True
-
 moduleclass = 'bio'