From 0199420f0aa399e66a136e0a32dcbe5bd30b1323 Mon Sep 17 00:00:00 2001
From: pescobar <pescobar001@gmail.com>
Date: Tue, 15 Apr 2014 13:40:53 +0200
Subject: [PATCH 1/3] Modeller-9.13 easyconfig

---
 .../m/Modeller/Modeller-9.13-Python-2.7.5.eb  | 39 +++++++++++++++++++
 1 file changed, 39 insertions(+)
 create mode 100644 easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb

diff --git a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb
new file mode 100644
index 000000000000..641956b9d818
--- /dev/null
+++ b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb
@@ -0,0 +1,39 @@
+# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
+# Author: Pablo Escobar Lopez
+# Swiss Institute of Bioinformatics
+# Biozentrum - University of Basel
+
+name = 'Modeller'
+version = '9.13'
+versionsuffix = '-Python-2.7.5'
+
+homepage = 'http://salilab.org/modeller/'
+description = """  MODELLER is used for homology or comparative modeling of protein 
+ three-dimensional structures (1,2). The user provides an alignment of a sequence to 
+ be modeled with known related structures and MODELLER automatically calculates 
+ a model containing all non-hydrogen atoms."""
+
+# Modeller uses a binary installer running ./Install
+toolchain = {'name': 'dummy', 'version': 'dummy'}
+
+source_urls = ['http://salilab.org/modeller/%(version)s/']
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [('Python', '2.7.5-goolf-1.4.10', '', True)]
+
+LICENSEKEY = 'AAABBBCCCDDD'
+
+sanity_check_paths = {
+    'files': ["bin/mod%(version)s", "bin/modpy.sh", "bin/modslave.py"],
+    'dirs': ["doc", "lib", "examples"]
+}
+
+# PYTHONPATH is for python 2.5, 2.6 or 2.7
+# LD_LIBRARY_PATH is for x86_64
+modextrapaths = {
+    'PYTHONPATH': 'lib/x86_64-intel8/python2.5',
+    'LD_LIBRARY_PATH': 'lib/x86_64-intel8'
+}
+
+moduleclass = 'bio'
+

From be2d50611ae7e9c513a0e88abe65f54e449134d1 Mon Sep 17 00:00:00 2001
From: Kenneth Hoste <kenneth.hoste@ugent.be>
Date: Mon, 8 Sep 2014 11:32:44 +0200
Subject: [PATCH 2/3] fix Modeller easyconfig after tweaks to easyblock

---
 .../m/Modeller/Modeller-9.13-Python-2.7.5.eb  | 24 +++++--------------
 1 file changed, 6 insertions(+), 18 deletions(-)

diff --git a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb
index 641956b9d818..044da4ff2ae5 100644
--- a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb
+++ b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb
@@ -5,7 +5,6 @@
 
 name = 'Modeller'
 version = '9.13'
-versionsuffix = '-Python-2.7.5'
 
 homepage = 'http://salilab.org/modeller/'
 description = """  MODELLER is used for homology or comparative modeling of protein 
@@ -13,27 +12,16 @@ description = """  MODELLER is used for homology or comparative modeling of prot
  be modeled with known related structures and MODELLER automatically calculates 
  a model containing all non-hydrogen atoms."""
 
-# Modeller uses a binary installer running ./Install
-toolchain = {'name': 'dummy', 'version': 'dummy'}
+toolchain = {'name': 'goolf', 'version': '1.4.10'}
 
 source_urls = ['http://salilab.org/modeller/%(version)s/']
 sources = [SOURCELOWER_TAR_GZ]
 
-dependencies = [('Python', '2.7.5-goolf-1.4.10', '', True)]
+python = 'Python'
+pyver = '2.7.5'
+versionsuffix = '-%s-%s' % (python, pyver)
+dependencies = [(python, pyver)]
 
-LICENSEKEY = 'AAABBBCCCDDD'
-
-sanity_check_paths = {
-    'files': ["bin/mod%(version)s", "bin/modpy.sh", "bin/modslave.py"],
-    'dirs': ["doc", "lib", "examples"]
-}
-
-# PYTHONPATH is for python 2.5, 2.6 or 2.7
-# LD_LIBRARY_PATH is for x86_64
-modextrapaths = {
-    'PYTHONPATH': 'lib/x86_64-intel8/python2.5',
-    'LD_LIBRARY_PATH': 'lib/x86_64-intel8'
-}
+license_key = 'dummykey'
 
 moduleclass = 'bio'
-

From 4a5bd6e8162a9e7379ba728ca20b60859f76c8aa Mon Sep 17 00:00:00 2001
From: Kenneth Hoste <kenneth.hoste@ugent.be>
Date: Mon, 8 Sep 2014 11:37:04 +0200
Subject: [PATCH 3/3] use existing 'key' easyconfig parameter

---
 easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb
index 044da4ff2ae5..4beaf4d721ff 100644
--- a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb
+++ b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb
@@ -22,6 +22,6 @@ pyver = '2.7.5'
 versionsuffix = '-%s-%s' % (python, pyver)
 dependencies = [(python, pyver)]
 
-license_key = 'dummykey'
+key = 'dummykey'
 
 moduleclass = 'bio'