From d2e75b4e8d04fc72531547a937aca3ce92e988e6 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Tue, 27 Sep 2016 16:44:08 +0200 Subject: [PATCH 1/2] add easyconfig BayPass-2.1-goolf-1.7.20.eb --- .../b/BayPass/BayPass-2.1-goolf-1.7.20.eb | 39 +++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb diff --git a/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb new file mode 100644 index 000000000000..c3aaee9173ae --- /dev/null +++ b/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb @@ -0,0 +1,39 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'MakeCp' + +name = 'BayPass' +version = '2.1' + +homepage = 'http://www1.montpellier.inra.fr/CBGP/software/baypass/index.html' +description = """BayPass is a population genomics software which is primarily aimed at identifying + genetic markers subjected to selection and/or associated to population-specific covariates + (e.g., environmental variables, quantitative or categorical phenotypic characteristics). + The underlying models explicitly account for (and may estimate) the covariance structure among the + population allele frequencies that originates from the shared history of the populations under study""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +source_urls = ['http://www1.montpellier.inra.fr/CBGP/software/baypass/files/'] +sources = ['%(namelower)s_%(version)s.tar.gz'] + +start_dir = 'sources' + +parallel = 1 + +files_to_copy = [(['sources/g_baypass'], 'bin/'), + 'BayPass_manual_2.1.pdf', + 'examples', + 'Licence_CeCILL-B_V1-en.txt', + 'utils' +] + +sanity_check_paths = { + 'files': ['bin/g_baypass'], + 'dirs': [] +} + +moduleclass = 'bio' From 2c38f64f071f77477487085242bf27a74afc283d Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Tue, 15 Nov 2016 21:51:44 +0100 Subject: [PATCH 2/2] added toolchainopts = {'openmp': True} --- easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb index c3aaee9173ae..e948c06e11a2 100644 --- a/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/BayPass/BayPass-2.1-goolf-1.7.20.eb @@ -16,6 +16,7 @@ description = """BayPass is a population genomics software which is primarily ai population allele frequencies that originates from the shared history of the populations under study""" toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'openmp': True} source_urls = ['http://www1.montpellier.inra.fr/CBGP/software/baypass/files/'] sources = ['%(namelower)s_%(version)s.tar.gz']