From 8b661f5a726bb8874ae576c9a16d8584c682b632 Mon Sep 17 00:00:00 2001 From: Miguel Dias Costa Date: Tue, 15 Oct 2019 10:53:29 +0800 Subject: [PATCH 1/4] prepare release notes for eb401 --- RELEASE_NOTES | 43 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 43 insertions(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index ffac3bfb39b3..2a94446b95c1 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -6,6 +6,49 @@ These release notes can also be consulted at http://easybuild.readthedocs.org/en The latest version of easybuild-easyconfig provides 8,378 easyconfig files, for 1,669 different software packages, incl. 31 different (compiler) toolchains. +v4.0.1 (October 16th 2019) +-------------------------- + +update/bugfix release + +- added example easyconfig files for 58 new software packages: + - ADOL-C (#9098), ALFA (#9106), ASTRID (#9088), Annif (#8536), bnpy (#8989), bpp-core (#9064), bpp-phyl (#9064), bpp-seq (#9064), + Clang-Python-bindings (#9084), CPB (#5869), Centrifuge (#8714), Chromaprint (#9047), Con3F (#8755), DeepSurv (#8096), Essentia (#9054), + FastRFS (#9088), GAT (#5871), Gaia (#9049), Gctf (#9097), GenomeMapper (#5872), Infomap (#9091), kpcalg (#8740), libglvnd (#9111), + libsamplerate (#9046), libssh (#8865), libzip (#9073), MetaboAnalystR (#8773), Metaxa2 (#8939), MotionCor2 (#8942), NFFT (#9085), + PhyML (#9103), PlaScope (#8714), PyCharm (#9100), pbcopper (#8928), pbmm2 (#8929), phylokit (#9088), phylonaut (#9088), phyx (#9090), + pycma (#8834), Q6 (#9069), Qt5Webkit (#9120), ROME (#9062), rioxarray (#9007), SVDquest (#9088), savvy (#9124), sciClone (#7806), + shapAAR (#8983), shrinkwrap (#9124), Structure (#5866), trimAl (#9063), thurstonianIRT (#9080), TurboVNC (#9111), Tracer (#8970), + TagLib (#9048), TRIQS (#8835), THetA (#8875), vcfnp (#5862), WebSocket++ (#8842) +- added additional easyconfigs for various supported software packages, including: + - ADOL C, ALFA 1.1.1, ANTLR 2.7.7, ASTRID 2.2.1, AdapterRemoval 2.3.1, Advisor 2019_update5.eb, Annif 0.40.0, Annif 0.40.0, Armadillo 9.700.2, arpack ng, BLASR 5.3.3, BLAST+ 2.9.0, Bazel 0.26.1, Bazel 0.29.1, BeautifulSoup 4.8.0, BioPerl 1.7.2, Boost 1.71.0, bnpy 0.1.6, bpp core, bpp phyl, bpp seq, CGAL 4.14.1, CMake 3.15.3, CPB 11, Centrifuge 1.0.3, Centrifuge 1.0.4, Chromaprint 1.4.3, Clang Python, Con3F 1.0, Cufflinks 20190706, cuDNN 7.6.2.24, cuDNN 7.6.4.38, DBus 1.13.12, DL_POLY_Classic 1.10, DL_POLY_Classic 1.10, DeepSurv 2.0.0, Doxygen 1.8.16, double conversion, EasyBuild 4.0.0.eb, Essentia 2.1_beta5, Exonerate 2.4.0, FFTW 3.3.8, FFmpeg 4.2.1, FastRFS 1.0, FreeXL 1.0.5, FriBidi 1.0.5, fastStructure 1.0, fastStructure 1.0, fosscuda 2019b.eb, GAT 1.2.2, GATK 4.1.3.0, GDAL 3.0.0, GEOS 3.7.2, GLib 2.62.0, GMT 5.4.5, Gaia 2.4.5, Gctf 1.06.eb, GenomeMapper 0.4.4, GlobalArrays 5.7, Go 1.13.1.eb, gcccuda 2019b.eb, git 2.21.0, gompic 2019b.eb, HDF5 1.10.5, HH suite, HMMER 3.2.1, HMMER 3.2.1, HPL 2.3, Horovod 0.18.1, IOR 3.2.1, ITK 5.0.1, Infomap 20190308, Inspector 2019_update5.eb, Java 1.8.0_221.eb, Julia 1.2.0, Keras 2.2.4, kpcalg 1.0.1, LAME 3.100, LLVM 9.0.0, LMDB 0.9.24, Leptonica 1.78.0, LibTIFF 4.0.10, libGLU 9.0.1, libdap 3.20.4, libdrm 2.4.99, libevent 2.1.11, libglvnd 1.2.0, libjpeg turbo, libsamplerate 0.1.9, libspatialindex 1.8.5, libspatialite 4.3.0a, libssh 0.9.0, libtirpc 1.1.4, libunwind 1.3.1, libzip 1.5.2, MACS2 2.1.2.1, MAFFT 7.429, MPFR 4.0.2, MUSCLE 3.8.1551, Mako 1.1.0, Mesa 19.1.7, Meson 0.51.2, MetaboAnalystR 2.0.1, Metaxa2 2.2, Molden 6.1, Mono 6.4.0.198, MotionCor2 1.2.6, magma 2.5.1, minimap2 2.17, mpi4py 3.0.2, mpi4py 3.0.2, mympingpong 0.8.0, mympingpong 0.8.0, NASM 2.14.02, NCO 4.8.1, NFFT 3.5.1, NFFT 3.5.1, NSPR 4.21, NSS 3.45, Net core, Nim 1.0.0, netcdf4 python, nettle 3.5.1, ORCA 4.2.0, OpenFOAM 2.2.x, OpenMPI 3.1.4, PCRE 8.43, PCRE2 10.33, PGI 19.7, PLUMED 2.5.2, PMIx 3.1.1, PMIx 3.1.1, PMIx 3.1.1, PMIx 3.1.4, PhyML 3.3.20190321, Pillow SIMD, Pillow SIMD, Pillow 5.3.0, PlaScope 1.3.1, PostgreSQL 11.3, PyCharm 2017.2.3.eb, PyTorch 1.2.0, Pysolar 0.8, parallel 20190922, pbbam 1.0.6, pbcopper 1.3.0, pbmm2 1.1.0, phylokit 1.0, phylonaut 20190626, phyx 1.01, pocl 1.3, protobuf python, psycopg2 2.8.3, pycma 2.7.0, Q6 20180205, QCA 2.1.3, QGIS 3.4.12, QJson 0.9.0, QScintilla 2.11.2, Qt 4.8.7, Qt5 5.13.1, Qt5Webkit 5.212.0, QtKeychain 0.9.1, QwtPolar 1.1.1, ROME 1.1.2, ReFrame 2.19.eb, RepeatMasker 4.0.9, Rust 1.37.0, re2c 1.2.1, rgeos 0.5, rioxarray 0.0.12, SCons 3.1.1, SNAP 2013, SVDquest 20190627, ScaLAPACK 2.0.2, Spack 0.12.1.eb, StringTie 2.0.3, Structure 2.3.4, Szip 2.1.1, savvy 1.3.0, sciClone 1.1, shapAAR 0.1.0, shrinkwrap 1.0.0, snappy 1.1.7, TAMkin 1.2.6, THetA 0.7, TRIQS 2.2.0, TagLib 1.11.1, TensorFlow 1.14.0, TensorFlow 2.0.0, Theano 1.0.3, Theano 1.0.4, Tracer 1.7.1, TurboVNC 2.2.3, tesseract 4.1.0, thurstonianIRT 0.9.0, torchvision 0.2.2, torchvision 0.2.2, trimAl 1.4.1, UCX 1.5.0, UCX 1.5.0, UCX 1.5.0, UCX 1.6.1, VEP 96.0, ViennaRNA 2.4.14, vcfnp 2.3.0, vsc mympirun, WebSocket++ 0.8.1, XML LibXML, x264 20190925, x265 3.2, xarray 0.13.0, YAPS 1.1.0, Yasm 1.3.0 +- minor enhancements, including: + - add EBImage extension to easyconfig for R-bundle-Bioconductor 3.9 (#8982) + - add check for http:// URLs in easyconfig files added/changed in PRs (#9012) + - add bbmle/emdbook/SOAR/rasterVis/tictoc extensions to R 3.6.0 easyconfigs (#9037) + - updated PyQt5 5.12.1 easyconfig to also build sip files + minor readability changes (#9071) + - enabled SQLITE_ENABLE_COLUMN_METADATA, which is needed for GDAL (and QGIS) (#9118) +- various bug fixes, including: + - add ncurses as dependency to lftp (#8646) + - add patch for gettext 0.19.8* to avoid picking up global git config that could break the installation (#8957) + - fix source_urls in GlimmerHMM easyconfigs (#8980) + - add patch for PyTorch 1.2.0 to use version of torchvision that is compatible with Python 1.2.0 (#8986) + - clarify the comment regarding the optarch setting in ITK-5.0.1 (#8991) + - fix homepage & description in easyconfig file for YAPS (#8993) + - add patch for PyTorch 1.2.0 to fix failing softmax test on Intel Sandy Bridge (#9010) + - fix permissions for TRF (#9034) + - ICU needs python 2.7+ to build, so add that as builddependency (#9053) + - fix patch checksum in ROME-1.1.2-intel-2019.02.eb (#9062) + - fix typo in PGI homepage in easyconfig for PGI 19.7 (#9068) + - fix urls for Anaconda and Miniconda (#9087) + - avoid that TurboVNC picks up system X11 libraries + add missing Mesa/libglvnd deps (#9111) + - PyTorch, TensorFlow, Theano: Use a cuDNN version that has support for the CUDA version in fosscuda/2019a (CUDA 10.1) (#9112) +- other changes: + - make sources in CUDA 10.1.105 use %(cudaarch)s template value (to use different source on POWER systems) (#8136) + - update Java/1.8 wrapper to Java/1.8.0_221 (#9038) + - allow divergent Java dep version as long as it's indicated by versionsuffix (#9041) + + v4.0.0 (September 20th 2019) ---------------------------- From a3d4e4df0dd3b068c6a425d2500c6fb3d468adb7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 15 Oct 2019 14:42:36 +0200 Subject: [PATCH 2/4] tweak release notes and bump version for v4.0.1 release --- RELEASE_NOTES | 38 ++++++++++++++++++++++---------------- setup.py | 2 +- 2 files changed, 23 insertions(+), 17 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 2a94446b95c1..bbab47187b69 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,7 +3,7 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 8,378 easyconfig files, for 1,669 different software packages, +The latest version of easybuild-easyconfig provides 8,479 easyconfig files, for 1,725 different software packages, incl. 31 different (compiler) toolchains. v4.0.1 (October 16th 2019) @@ -12,37 +12,43 @@ v4.0.1 (October 16th 2019) update/bugfix release - added example easyconfig files for 58 new software packages: - - ADOL-C (#9098), ALFA (#9106), ASTRID (#9088), Annif (#8536), bnpy (#8989), bpp-core (#9064), bpp-phyl (#9064), bpp-seq (#9064), - Clang-Python-bindings (#9084), CPB (#5869), Centrifuge (#8714), Chromaprint (#9047), Con3F (#8755), DeepSurv (#8096), Essentia (#9054), - FastRFS (#9088), GAT (#5871), Gaia (#9049), Gctf (#9097), GenomeMapper (#5872), Infomap (#9091), kpcalg (#8740), libglvnd (#9111), - libsamplerate (#9046), libssh (#8865), libzip (#9073), MetaboAnalystR (#8773), Metaxa2 (#8939), MotionCor2 (#8942), NFFT (#9085), - PhyML (#9103), PlaScope (#8714), PyCharm (#9100), pbcopper (#8928), pbmm2 (#8929), phylokit (#9088), phylonaut (#9088), phyx (#9090), - pycma (#8834), Q6 (#9069), Qt5Webkit (#9120), ROME (#9062), rioxarray (#9007), SVDquest (#9088), savvy (#9124), sciClone (#7806), - shapAAR (#8983), shrinkwrap (#9124), Structure (#5866), trimAl (#9063), thurstonianIRT (#9080), TurboVNC (#9111), Tracer (#8970), - TagLib (#9048), TRIQS (#8835), THetA (#8875), vcfnp (#5862), WebSocket++ (#8842) + - ADOL-C (#9098), ALFA (#9106), ASTRID (#9088), Annif (#8536), bnpy (#8989), bpp-core (#9064), bpp-phyl (#9064), + bpp-seq (#9064), Clang-Python-bindings (#9084), CPB (#5869), Centrifuge (#8714), Chromaprint (#9047), Con3F (#8755), + DeepSurv (#8096), Essentia (#9054), FastRFS (#9088), GAT (#5871), Gaia (#9049), Gctf (#9097), GenomeMapper (#5872), + Infomap (#9091), kpcalg (#8740), libglvnd (#9111, #9130), libsamplerate (#9046), libssh (#8865), libzip (#9073), + MetaboAnalystR (#8773), Metaxa2 (#8939), MotionCor2 (#8942), NFFT (#9085), PhyML (#9103), PlaScope (#8714), + PyCharm (#9100), pbcopper (#8928), pbmm2 (#8929), phylokit (#9088), phylonaut (#9088), phyx (#9090), pycma (#8834), + Q6 (#9069), Qt5Webkit (#9120), ROME (#9050, #9062), rioxarray (#9007), SVDquest (#9088), savvy (#9124), + sciClone (#7806), shapAAR (#8983), shrinkwrap (#9124), Structure (#5866), trimAl (#9063), thurstonianIRT (#9080), + TurboVNC (#9110, #9111, #9128), Tracer (#8970), TagLib (#9048), TRIQS (#8835), THetA (#8875), vcfnp (#5862), + WebSocket++ (#8842) - added additional easyconfigs for various supported software packages, including: - - ADOL C, ALFA 1.1.1, ANTLR 2.7.7, ASTRID 2.2.1, AdapterRemoval 2.3.1, Advisor 2019_update5.eb, Annif 0.40.0, Annif 0.40.0, Armadillo 9.700.2, arpack ng, BLASR 5.3.3, BLAST+ 2.9.0, Bazel 0.26.1, Bazel 0.29.1, BeautifulSoup 4.8.0, BioPerl 1.7.2, Boost 1.71.0, bnpy 0.1.6, bpp core, bpp phyl, bpp seq, CGAL 4.14.1, CMake 3.15.3, CPB 11, Centrifuge 1.0.3, Centrifuge 1.0.4, Chromaprint 1.4.3, Clang Python, Con3F 1.0, Cufflinks 20190706, cuDNN 7.6.2.24, cuDNN 7.6.4.38, DBus 1.13.12, DL_POLY_Classic 1.10, DL_POLY_Classic 1.10, DeepSurv 2.0.0, Doxygen 1.8.16, double conversion, EasyBuild 4.0.0.eb, Essentia 2.1_beta5, Exonerate 2.4.0, FFTW 3.3.8, FFmpeg 4.2.1, FastRFS 1.0, FreeXL 1.0.5, FriBidi 1.0.5, fastStructure 1.0, fastStructure 1.0, fosscuda 2019b.eb, GAT 1.2.2, GATK 4.1.3.0, GDAL 3.0.0, GEOS 3.7.2, GLib 2.62.0, GMT 5.4.5, Gaia 2.4.5, Gctf 1.06.eb, GenomeMapper 0.4.4, GlobalArrays 5.7, Go 1.13.1.eb, gcccuda 2019b.eb, git 2.21.0, gompic 2019b.eb, HDF5 1.10.5, HH suite, HMMER 3.2.1, HMMER 3.2.1, HPL 2.3, Horovod 0.18.1, IOR 3.2.1, ITK 5.0.1, Infomap 20190308, Inspector 2019_update5.eb, Java 1.8.0_221.eb, Julia 1.2.0, Keras 2.2.4, kpcalg 1.0.1, LAME 3.100, LLVM 9.0.0, LMDB 0.9.24, Leptonica 1.78.0, LibTIFF 4.0.10, libGLU 9.0.1, libdap 3.20.4, libdrm 2.4.99, libevent 2.1.11, libglvnd 1.2.0, libjpeg turbo, libsamplerate 0.1.9, libspatialindex 1.8.5, libspatialite 4.3.0a, libssh 0.9.0, libtirpc 1.1.4, libunwind 1.3.1, libzip 1.5.2, MACS2 2.1.2.1, MAFFT 7.429, MPFR 4.0.2, MUSCLE 3.8.1551, Mako 1.1.0, Mesa 19.1.7, Meson 0.51.2, MetaboAnalystR 2.0.1, Metaxa2 2.2, Molden 6.1, Mono 6.4.0.198, MotionCor2 1.2.6, magma 2.5.1, minimap2 2.17, mpi4py 3.0.2, mpi4py 3.0.2, mympingpong 0.8.0, mympingpong 0.8.0, NASM 2.14.02, NCO 4.8.1, NFFT 3.5.1, NFFT 3.5.1, NSPR 4.21, NSS 3.45, Net core, Nim 1.0.0, netcdf4 python, nettle 3.5.1, ORCA 4.2.0, OpenFOAM 2.2.x, OpenMPI 3.1.4, PCRE 8.43, PCRE2 10.33, PGI 19.7, PLUMED 2.5.2, PMIx 3.1.1, PMIx 3.1.1, PMIx 3.1.1, PMIx 3.1.4, PhyML 3.3.20190321, Pillow SIMD, Pillow SIMD, Pillow 5.3.0, PlaScope 1.3.1, PostgreSQL 11.3, PyCharm 2017.2.3.eb, PyTorch 1.2.0, Pysolar 0.8, parallel 20190922, pbbam 1.0.6, pbcopper 1.3.0, pbmm2 1.1.0, phylokit 1.0, phylonaut 20190626, phyx 1.01, pocl 1.3, protobuf python, psycopg2 2.8.3, pycma 2.7.0, Q6 20180205, QCA 2.1.3, QGIS 3.4.12, QJson 0.9.0, QScintilla 2.11.2, Qt 4.8.7, Qt5 5.13.1, Qt5Webkit 5.212.0, QtKeychain 0.9.1, QwtPolar 1.1.1, ROME 1.1.2, ReFrame 2.19.eb, RepeatMasker 4.0.9, Rust 1.37.0, re2c 1.2.1, rgeos 0.5, rioxarray 0.0.12, SCons 3.1.1, SNAP 2013, SVDquest 20190627, ScaLAPACK 2.0.2, Spack 0.12.1.eb, StringTie 2.0.3, Structure 2.3.4, Szip 2.1.1, savvy 1.3.0, sciClone 1.1, shapAAR 0.1.0, shrinkwrap 1.0.0, snappy 1.1.7, TAMkin 1.2.6, THetA 0.7, TRIQS 2.2.0, TagLib 1.11.1, TensorFlow 1.14.0, TensorFlow 2.0.0, Theano 1.0.3, Theano 1.0.4, Tracer 1.7.1, TurboVNC 2.2.3, tesseract 4.1.0, thurstonianIRT 0.9.0, torchvision 0.2.2, torchvision 0.2.2, trimAl 1.4.1, UCX 1.5.0, UCX 1.5.0, UCX 1.5.0, UCX 1.6.1, VEP 96.0, ViennaRNA 2.4.14, vcfnp 2.3.0, vsc mympirun, WebSocket++ 0.8.1, XML LibXML, x264 20190925, x265 3.2, xarray 0.13.0, YAPS 1.1.0, Yasm 1.3.0 + - Armadillo 9.700.2, arpack-ng 3.7.0, BLASR 5.3.3, Bazel 0.26.1 + Bazel 0.29.1, Cufflinks 20190706, + DL_POLY_Classic 1.10, FFmpeg 4.2.1, Go 1.13.1, Horovod 0.18.1, IOR 3.2.1, Julia 1.2.0, LLVM 9.0.0, Mesa 19.1.7, + Molden 6.1, Mono 6.4.0.198, NCO 4.8.1, , Net-core 3.0.0, Nim 1.0.0, OpenFOAM 2.2.x, PGI 19.7, PLUMED 2.5.2, + PMIx 3.1.4, PostgreSQL 11.3, psycopg2 2.8.3, QGIS 3.4.12, QScintilla 2.11.2, Qt5 5.13.1, ReFrame 2.19, + Rust 1.37.0, Spack 0.12.1, TAMkin 1.2.6, TensorFlow 1.14.0 w/ fosscuda/2019a, TensorFlow 2.0.0 w/ foss/2019a, + UCX 1.6.1, VEP 96.0, xarray 0.13.0 +- added easyconfigs for fosscuda/2019a toolchain (#9066) - minor enhancements, including: - add EBImage extension to easyconfig for R-bundle-Bioconductor 3.9 (#8982) - add check for http:// URLs in easyconfig files added/changed in PRs (#9012) - add bbmle/emdbook/SOAR/rasterVis/tictoc extensions to R 3.6.0 easyconfigs (#9037) - updated PyQt5 5.12.1 easyconfig to also build sip files + minor readability changes (#9071) - enabled SQLITE_ENABLE_COLUMN_METADATA, which is needed for GDAL (and QGIS) (#9118) + - also install include/GL/internal/ for recent Mesa installations (#9129) - various bug fixes, including: - add ncurses as dependency to lftp (#8646) - add patch for gettext 0.19.8* to avoid picking up global git config that could break the installation (#8957) - fix source_urls in GlimmerHMM easyconfigs (#8980) - - add patch for PyTorch 1.2.0 to use version of torchvision that is compatible with Python 1.2.0 (#8986) + - add patch for PyTorch 1.2.0 to use version of torchvision that is compatible with PyTorch 1.2.0 (#8986) - clarify the comment regarding the optarch setting in ITK-5.0.1 (#8991) - fix homepage & description in easyconfig file for YAPS (#8993) - add patch for PyTorch 1.2.0 to fix failing softmax test on Intel Sandy Bridge (#9010) - fix permissions for TRF (#9034) - - ICU needs python 2.7+ to build, so add that as builddependency (#9053) - - fix patch checksum in ROME-1.1.2-intel-2019.02.eb (#9062) - - fix typo in PGI homepage in easyconfig for PGI 19.7 (#9068) + - ICU needs Python 2.7+ to build, so add that as builddependency (#9053) - fix urls for Anaconda and Miniconda (#9087) - - avoid that TurboVNC picks up system X11 libraries + add missing Mesa/libglvnd deps (#9111) - - PyTorch, TensorFlow, Theano: Use a cuDNN version that has support for the CUDA version in fosscuda/2019a (CUDA 10.1) (#9112) + - use a cuDNN version that has support for the CUDA version in fosscuda/2019a (CUDA 10.1) in PyTorch, TensorFlow and Theano easyconfigs (#9112) - other changes: - make sources in CUDA 10.1.105 use %(cudaarch)s template value (to use different source on POWER systems) (#8136) - update Java/1.8 wrapper to Java/1.8.0_221 (#9038) diff --git a/setup.py b/setup.py index eaf9a154a634..4e44a5da9941 100644 --- a/setup.py +++ b/setup.py @@ -44,7 +44,7 @@ # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '4.0.1.dev0' +VERSION = '4.0.1' MAJ_VER = VERSION.split('.')[0] MAJMIN_VER = '.'.join(VERSION.split('.')[0:2]) From 28dd3947124b91efcead76c820db5c53dafec4aa Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 17 Oct 2019 06:08:02 +0200 Subject: [PATCH 3/4] fix release date for v4.0.1 in RELEASE_NOTES --- RELEASE_NOTES | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index bbab47187b69..8d1c8717f2ad 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -6,7 +6,7 @@ These release notes can also be consulted at http://easybuild.readthedocs.org/en The latest version of easybuild-easyconfig provides 8,479 easyconfig files, for 1,725 different software packages, incl. 31 different (compiler) toolchains. -v4.0.1 (October 16th 2019) +v4.0.1 (October 15th 2019) -------------------------- update/bugfix release @@ -587,7 +587,7 @@ bugfix/update release - enable building of MPI libraries in VTK 8.1.0 easyconfigs (#6460, #6429) - minor changes, including: - rename 'Canu' to 'canu' for v1.7 (#6389) - - update existing easyconfigs for OpenCV 3.4.1 to use new custom easyblock for OpenCV (#6509) + - update existing easyconfigs for OpenCV 3.4.1 to use new custom easyblock for OpenCV (#6509) - fix software name in Bsoft easyconfig (#6557) - various bug fixes, including: - fix SAMtools dependency for ChimPipe, required SAMtools < 1.0 (#5930) @@ -854,7 +854,7 @@ bugfix/update release Python 2.7.14 + 3.6.2, SAMtools 1.6, scikit-image 0.13.0, scikit-learn 0.19.0, Tensorflow 1.3.0, vsc-mympirun 4.0.2 - minor enhancements, including: - add xkeyboard-config component in X11 bundle (#5066) - - clean up use of wcleanAll in OpenFOAM-Extend easyconfigs, now handled by OpenFOAM easyblock (#5131) + - clean up use of wcleanAll in OpenFOAM-Extend easyconfigs, now handled by OpenFOAM easyblock (#5131) - also install run_rcorrector.pl with Rcorrector (#5135) - add SHA256 checksum to PyCUDA easyconfig (#5154) - fix/improve description in HDF5 easyconfigs (#5182) @@ -1094,7 +1094,7 @@ feature release - added easyconfigs for foss/2017a and intel/2017a common toolchains (#3968, #3969) - added example easyconfig files for 16 new software packages: - ack (#3983), cclib (#4065), ConnectomeWorkbench (#3411), GroIMP (#3994), hyperspy (#3991), I-TASSER (#1216), - ImageJ (#4023, #4062), libconfig (#4051), libspatialindex (#4002), mahotas (#3990), Minia (#3949), muParser (#4007), + ImageJ (#4023, #4062), libconfig (#4051), libspatialindex (#4002), mahotas (#3990), Minia (#3949), muParser (#4007), NetLogo (#3941), QIIME (#3868), QwtPolar (#4019), Tensorflow (#4084, #4095) - added additional easyconfigs for various supported software packages, including: - Boost 1.62.0 + 1.63.0, CP2K 4.1, GSL 2.3, PLUMED 2.3.0, Qt5 5.7.1, WRF 3.8, WPS 3.8, Yade 2016.06a, zlib 1.2.11 From 6e783ad49ff9c0d559f57eb3b45f2c16edd1d830 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 17 Oct 2019 07:12:17 +0200 Subject: [PATCH 4/4] bump version to 4.0.2dev --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 4e44a5da9941..07f584804a41 100644 --- a/setup.py +++ b/setup.py @@ -44,7 +44,7 @@ # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '4.0.1' +VERSION = '4.0.2.dev0' MAJ_VER = VERSION.split('.')[0] MAJMIN_VER = '.'.join(VERSION.split('.')[0:2])