diff --git a/.codecov.yml b/.codecov.yml index e17376e8..d001c41d 100644 --- a/.codecov.yml +++ b/.codecov.yml @@ -1,8 +1,26 @@ +# Codecov configuration +# https://docs.codecov.com/docs/codecov-yaml + github_checks: annotations: true + comment: layout: 'reach, diff, flags, files' behavior: default - require_changes: false # if true: only post the comment if coverage changes - require_base: no # [yes :: must have a base report to post] - require_head: yes # [yes :: must have a head report to post] + require_changes: false + require_base: false + require_head: true + +coverage: + status: + project: + default: + target: auto + threshold: 1% + # Make project coverage informational (won't block PR) + informational: true + patch: + default: + target: auto + # Require patch coverage but with threshold + threshold: 1% diff --git a/.copier-answers.yml b/.copier-answers.yml index 23fa8fda..3929e0b0 100644 --- a/.copier-answers.yml +++ b/.copier-answers.yml @@ -1,11 +1,11 @@ # WARNING: Do not edit this file manually. # Any changes will be overwritten by Copier. -_commit: v0.11.2-5-gd120259 +_commit: v0.11.3-3-ga67ebc3 _src_path: gh:easyscience/templates lib_docs_url: https://easyscience.github.io/core lib_doi: 10.5281/zenodo.18163581 lib_package_name: easyscience -lib_python_max: '3.13' +lib_python_max: '3.14' lib_python_min: '3.11' lib_repo_name: core project_contact_email: support@easyscience.org diff --git a/.github/actions/setup-pixi/action.yml b/.github/actions/setup-pixi/action.yml index ec7d7ba7..dc3232c6 100644 --- a/.github/actions/setup-pixi/action.yml +++ b/.github/actions/setup-pixi/action.yml @@ -33,7 +33,7 @@ inputs: runs: using: 'composite' steps: - - uses: prefix-dev/setup-pixi@v0.9.4 + - uses: prefix-dev/setup-pixi@v0.9.5 with: environments: ${{ inputs.environments }} activate-environment: ${{ inputs.activate-environment }} diff --git a/.github/workflows/dashboard.yml b/.github/workflows/dashboard.yml index 9d1f2b0b..573e3086 100644 --- a/.github/workflows/dashboard.yml +++ b/.github/workflows/dashboard.yml @@ -32,9 +32,13 @@ jobs: - name: Set up pixi uses: ./.github/actions/setup-pixi + # Install badgery into the active Pixi environment without modifying + # pixi.toml/pixi.lock. Using `pixi add` here re-solves the whole project + # and rebuilds the local editable package, which can cause intermittent + # Linux CI failures (`Text file busy`, os error 26). - name: Install badgery shell: bash - run: pixi add --pypi --git https://github.com/enhantica/badgery badgery + run: pixi run python -m pip install git+https://github.com/enhantica/badgery - name: Run docstring coverage and code complexity/maintainability checks run: | diff --git a/.github/workflows/pypi-test.yml b/.github/workflows/pypi-test.yml index 84aad211..37fd3b5d 100644 --- a/.github/workflows/pypi-test.yml +++ b/.github/workflows/pypi-test.yml @@ -49,9 +49,9 @@ jobs: working-directory: easyscience run: pixi project system-requirements add macos 14.0 - - name: Add Python 3.13 from Conda + - name: Add Python 3.14 from Conda working-directory: easyscience - run: pixi add "python=3.13" + run: pixi add "python=3.14" - name: Add other Conda dependencies working-directory: easyscience diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 29d87166..2e3e51aa 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -44,8 +44,8 @@ concurrency: # Set the environment variables to be used in all jobs defined in this workflow env: CI_BRANCH: ${{ github.head_ref || github.ref_name }} - PY_VERSIONS: '3.11 3.13' - PIXI_ENVS: 'py-311-env py-313-env' + PY_VERSIONS: '3.11 3.14' + PIXI_ENVS: 'py-311-env py-314-env' jobs: # Job 1: Set up environment variables diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 7b97f9eb..ca8a1bc1 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -248,6 +248,12 @@ or to run only Python linting checks: pixi run py-lint-check ``` +To add missing license headers: + +```bash +pixi run spdx-add +``` + Some formatting issues can be fixed automatically: ```bash diff --git a/codecov.yml b/codecov.yml deleted file mode 100644 index f62b13ab..00000000 --- a/codecov.yml +++ /dev/null @@ -1,13 +0,0 @@ -# Codecov configuration -# https://docs.codecov.com/docs/codecovyml-reference - -coverage: - status: - project: - default: - # Make project coverage informational (won't block PR) - informational: true - patch: - default: - # Require patch coverage but with threshold - threshold: 1% diff --git a/docs/docs/installation-and-setup/index.md b/docs/docs/installation-and-setup/index.md index 2c851d2d..83b7b2da 100644 --- a/docs/docs/installation-and-setup/index.md +++ b/docs/docs/installation-and-setup/index.md @@ -5,7 +5,7 @@ icon: material/cog-box # :material-cog-box: Installation & Setup **EasyScience** is a cross-platform Python library compatible with -**Python 3.11** through **3.13**. +**Python 3.11** through **3.14**. To install and set up EasyScience, we recommend using [**Pixi**](https://pixi.prefix.dev), a modern package manager for @@ -62,9 +62,9 @@ This section describes the simplest way to set up EasyScience using pixi init easyscience cd easyscience ``` -- Set the Python version for the Pixi environment (e.g., 3.13): +- Set the Python version for the Pixi environment (e.g., 3.14): ```txt - pixi add python=3.13 + pixi add python=3.14 ``` - Add EasyScience to the Pixi environment from PyPI: ```txt diff --git a/pixi.lock b/pixi.lock index 83a140f2..144dca8c 100644 --- a/pixi.lock +++ b/pixi.lock @@ -1,4 +1,8 @@ -version: 6 +version: 7 +platforms: +- name: linux-64 +- name: osx-arm64 +- name: win-64 environments: default: channels: @@ -6,36 +10,73 @@ environments: - url: https://conda.anaconda.org/conda-forge/ indexes: - https://pypi.org/simple - options: - pypi-prerelease-mode: if-necessary-or-explicit packages: linux-64: - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda + - 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