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Move to seurat 4 #29
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Move to seurat 4 #29
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…e-expression-group/r-seurat-scripts into feature/move_to_seurat_4
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# Conflicts: # .github/workflows/pr.yaml # cli-generated/manually_crafted_YAML/seurat-convert.yaml # r-seurat-scripts-post-install-tests.bats # r-seurat-scripts-post-install-tests.sh # seurat-convert.R # seurat-find-clusters.R # seurat-find-neighbours.R # seurat-integration.R # seurat-run-pca.R # seurat-split-object.R # test-environment.yml
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Moves Seurat script to Seurat 4.0 (higher versions have issues with some of the IO conversions, so I intend to park it here, release, and then fix issues with later seurat versions).
A lot of new tools, automatically written, through the cli generator:
To be merged after #23