EcoHealth Alliance

Repositories

• reservoir

  eha-modeling-analytics eha-infrastructure
  Shell 2 10 3 0 Updated Oct 8, 2020

• RVF-Multinomial-Hurdle

  Repository for analysis for Farm-Level Risk Factors of Increased Abortion and Mortality in Domestic Ruminants during the 2010 Rift Valley Fever Outbreak in Central South Africa
  R 0 0 0 0 Updated Oct 1, 2020

• wab-net-website
  Python 1 1 12 0 Updated Sep 28, 2020

• GVP_sites_zonation

  Sampling site selection for the Global Virome Project using Zonation
  R 0 0 0 0 Updated Sep 14, 2020

• amr-db

  AMR emergence events data cleaning and compilation
  HTML MIT 0 0 4 0 Updated Sep 14, 2020

• GeoName-Curator

  A UI for curation of geoname annotations
  CoffeeScript 0 0 0 1 Updated Aug 20, 2020

• eidr-connect

  EIDR Connect takes the data extracted by GRITS and structures it to reconstruct disease events as they are reported across different documents.
  CoffeeScript Apache-2.0 1 0 0 1 Updated Aug 20, 2020

• shiny-auth0

  Forked from auth0/shiny-auth0

  Auth0 shiny proxy
  JavaScript 35 0 0 0 Updated Aug 19, 2020

• fasterize

  High performance raster conversion for modern spatial data 🚀🌏▦

  r rcpp raster spatial rstats sf rcpparmadillo
  C++ 15 142 23 (1 issue needs help) 1 Updated Jul 24, 2020

• predict-ma-reports
  R 0 0 0 1 Updated Jul 23, 2020

• yenpathy

  Yen's K Shortest Paths in R, Quickly
  C++ 1 3 8 0 Updated Jun 8, 2020

• grits-api
  JavaScript Apache-2.0 2 3 1 2 Updated May 20, 2020

• HP3

  Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975

  eha-modeling-analytics eha-predict
  HTML MIT 5 7 3 1 Updated May 7, 2020

• EpiTator

  EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.

  nlp geonames spacy epidemiology disease-surveillance toponym-resolution
  Python Apache-2.0 8 31 1 1 Updated May 4, 2020

• awesome-parasite

  A curated list of host-parasite information

  awesome awesome-list eha-modeling-analytics
  2 12 8 0 Updated Apr 9, 2020

• ai4e-data-labeling

  Creating a subset of the PMC OAS for the AI for Earth Data Labeling grant
  Jupyter Notebook 0 0 0 1 Updated Mar 31, 2020

• predict-behav-report

  Template for behavioral data analysis
  R 0 0 1 0 Updated Mar 2, 2020

• bd-econ-backup
  R 0 0 0 0 Updated Jan 19, 2020

• lemis

  R package providing access to data on wildlife imports into the United States
  R 0 13 1 0 Updated Jan 17, 2020

• hotspots2

  This code powers the models for the paper "Global hotspots and correlates of emerging zoonotic diseases".
  R Apache-2.0 0 5 0 0 Updated Dec 19, 2019

• infrastructure

  Automation code related to jenkins and docker based infrastructure
  Shell Apache-2.0 1 1 0 0 Updated Dec 10, 2019

• eha-ma-handbook

  EcoHealth Alliance Modeling & Analytics Handbook

  eha-modeling-analytics eha-training
  TeX 2 2 2 1 Updated Nov 1, 2019

• docker-compose-git-crypt
  Dockerfile 0 0 0 0 Updated Nov 1, 2019

• dfhc

  Deep Forest Human Contact datasets
  R Apache-2.0 0 0 0 0 Updated Sep 10, 2019

• ibis
  JavaScript 0 0 0 0 Updated Sep 9, 2019

• geoname-annotator-training

  Training and evaluation scripts for the EpiTator geoname annotator
  Python Apache-2.0 0 1 0 0 Updated Sep 7, 2019

• eidr
  CoffeeScript Apache-2.0 0 1 13 0 Updated Aug 28, 2019

• livescience

  eha-modeling-analytics eha-infrastructure
  HTML 0 0 1 0 Updated Jul 27, 2019

• pubcrawler

  PubCrawler uses the EpiTator framework (known at time of writing as Annie) to resolve toponyms in the PubMed Central Open Access Subset. It was used to create the estimate of reporting bias in the paper "Global hotspots and correlates of emerging zoonotic diseases".
  Jupyter Notebook Apache-2.0 1 2 0 0 Updated Jul 9, 2019

• 2019-06-06-ehn-workshop
  R 0 0 0 0 Updated Jun 6, 2019